Array 1 163870-162393 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE494 494_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163869 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163808 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163746 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163685 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163624 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163563 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163502 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163441 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163380 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 163319 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 163258 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 163197 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 163136 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 163074 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162971 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162910 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162849 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162788 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 162727 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 162666 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162605 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162544 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162483 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162422 29 96.6 0 A............................ | A [162395] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181800-180002 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDOK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SE494 494_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181799 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 181738 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 181677 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 181616 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 181555 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181494 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 181433 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181372 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181311 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181250 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181189 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 181128 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 181067 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 181006 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180945 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180884 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180823 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180762 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180701 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 180640 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 180579 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 180517 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 180456 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 180395 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 180334 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 180273 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180212 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180151 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180090 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180029 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //