Array 1 5143-5505 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBM01000022.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ07 sequence22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5143 36 100.0 28 .................................... GTTTATTACAAAATAAAAACTCCCAAGA 5207 36 100.0 30 .................................... TCAGGCCATGGGAGATTGTGATCGAGGAGA 5273 36 100.0 30 .................................... AAACATGATATTGGTAGACTTCCATGATAC 5339 36 100.0 30 .................................... TACTCATAAGGTTTTCCTTTCTTAAAGTTC 5405 36 100.0 29 .................................... TGCTCGTCCACCATCTTTAAACGGTAAGA 5470 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CAATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 38342-38643 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBM01000015.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ07 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 38342 32 100.0 34 ................................ TCTGGCTCTCTCATAGTCTCCATCACAGTCAAGA 38408 32 100.0 36 ................................ ATCTTGTGGCTTGCTAAAGTCAAGGAGCAATTCCTC 38476 32 100.0 38 ................................ GTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAA 38546 32 100.0 34 ................................ AAATTGCAACCTAGCAAATTCTACTTTCTCGACC 38612 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 100.0 36 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGCCCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : TAACATCTACGATACCATCTGCATCTCGTACATGGTCTCACCCTTCGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTGAGTGGATTGAAATCCGACAACTTACCTAATCAACTCTATCATGTTACAGTCTCACCCTTCGCGGGTGAGTGGATTGAAATGTCAGTCATACGTGCCTGATAAACAAATTTCAGCGGGTCTCACCCTTCGCGGGTGAGTGGATTGAAATCTTGCTGTAATCCGGTTTTTTAACCTCTTTTTTAACGTCTCACCCTTCGCGGGTGAGTGGATTGAAATAGCAATTTACAAATTTGGCAGTGGCTTGTTTTGGTCTCACCCTTCGCGGGTGAGTGGATTGAAATTGAAGGTGTACCCGTATTGCGACCAAACGAACCAGTCTCACCCTTCGCGGGTGAGTGGATTGAAATATTTCCTCC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 38835-39332 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLBM01000015.1 Streptococcus dysgalactiae subsp. equisimilis strain KNZ07 sequence15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38835 32 100.0 36 ................................ GTCAGTCATACGTGCCTGATAAACAAATTTCAGCGG 38903 32 100.0 36 ................................ CTTGCTGTAATCCGGTTTTTTAACCTCTTTTTTAAC 38971 32 100.0 33 ................................ AGCAATTTACAAATTTGGCAGTGGCTTGTTTTG 39036 32 100.0 34 ................................ TGAAGGTGTACCCGTATTGCGACCAAACGAACCA 39102 32 100.0 35 ................................ ATTTCCTCCTTTGTCCCGCCAAAACCTAATTTAAG 39169 32 96.9 34 .....C.......................... TGGGGAGAGGAGGTGAAGTAGATGAAGAAGTTGA 39235 32 100.0 34 ................................ GATGACGATAATTACGAAGTTATTGAGGTGACGG 39301 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.4 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : TGGCGCTGTCTCACCCTTCGCGGGTGAGTGGATTGAAATTCTGGCTCTCTCATAGTCTCCATCACAGTCAAGAGTCTCACCCTTCGCGGGTGAGTGGATTGAAATATCTTGTGGCTTGCTAAAGTCAAGGAGCAATTCCTCGTCTCACCCTTCGCGGGTGAGTGGATTGAAATGTAATATTGTTGCGCGTCACGGTAACTAAAATACGAAAGTCTCACCCTTCGCGGGTGAGTGGATTGAAATAAATTGCAACCTAGCAAATTCTACTTTCTCGACCGTCTCACCCTTCGCGGGTGAGTGGATTGAAATAACATCTACGATACCATCTGCATCTCGTACATGGTCTCACCCTTCGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGTGAGTGGATTGAAATCCGACAACTTACCTAATCAACTCTATCATGTTACA # Right flank : CCTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCTATTTATGTAGCAAGTATCAATCAGGACCACTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //