Array 1 530068-529702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT990039.1 Massilistercora timonensis strain Marseille-P3756 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 530067 36 100.0 30 .................................... CTTCACGGATTGGTTTGAGAGAATCAAAGG 530001 36 100.0 30 .................................... GTTGGATGGTCTTGATCTTCGCCTTGGAAG 529935 36 100.0 30 .................................... ACAAGCCGGAGCCGGGAGATGTCATCTTCT 529869 36 94.4 30 .......G.............A.............. GATCATGGATCATTATACGGTGCAGTGCCC 529803 36 97.2 30 .....................A.............. AGCGAGCCCAGGATGAGGAAAAGATGTTCT 529737 36 94.4 0 .....................A.....A........ | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.7 30 GTTTGAGAGTAGTGTAAATTTGTATGGTAGTTAAAC # Left flank : ATCCCTCCAATCCGGGAGAGCAGTTCTGCCGAGGCTGAATTCGAGATCTCCAGGACAAGTTTCCCTTTCCGGATCACAAGATCCGGATGGAAAACGGAGGATACGTCCGGTGACACAGCAGGAAGTTTGATCTCGGCGAAAGATACGGACTGCTGAACGGCAGATAACTGTCCTGTCCCTGTAACTGCAAGCAGGGACGGATTCTGAGATGCTTCATAAGCTTCCCGGCGCAGGATGCGCTGCCAGTAAAAGAACTGTTTTTCAGAGATCCCGTTTGCCCGGCACCAGGCAGTCTTTGACATCCCGCTGTTCATACATTCATTCAGGATCCTGGTCCAATGCTCTGCACGGACCTGATGTGTGATTTTATCCATGGCGCTGACTCCTTTAAAAAACTTGTAGTTTTCTGGAGTTATTATCTCATGGAGTGAGGAAACTAGCACGGTACTAATGATTTACCGTATACAAACTGGCGGAGGCCACCATGCAGCCGTTCAAGG # Right flank : CGGGAATCATGTCCTTTGGAAAGGATGATTTTGAAAGAGTAGCCGAAGGTAGAGGAGTTTAAGTGTTGCAATGAAGAATATACATATTCTATTAGATTGTTGAAACCCTTAAACGAGCAGGTGGTATATAATGAGATATACACAGAGACGATGTTTAGGATTGATCCACTCGGAGATACTGTGGAAGATATCCAAGATATTGCAATGCAAATCCTTGCAGAAAGGTGGTATATCACATATGACAAGAGACGATTTAAGTCCTGAAAAGAAAAAACAATATGCTGAAATTGTAGAAGCCATGATGAAAGATATCAAAAGACGACAGGAAAATCAGCAACCTTTGAAAGAAAGTCAGTTGTCATGCGCATATGGTAATAAACCATATTTTGAAGTACAAAAGATATACCTTCCACAGTTACAGGCCTTATTTGAGAAGAGTTAATAATGTATCACGGGAAAATGACAGATGAACTAAAAAAACTATATTCTGAATATGAGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAAATTTGTATGGTAGTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 535121-532907 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT990039.1 Massilistercora timonensis strain Marseille-P3756 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 535120 36 100.0 30 .................................... AGACCTGTTTCTGCGGCTTCACTCAACATA 535054 36 100.0 30 .................................... CAGCGGGCAGGCGATGATCGACCAACTGCG 534988 36 100.0 30 .................................... TACCTGCTCTCCCTGCGCCTGTTTGTAAAA 534922 36 100.0 30 .................................... AACCTTCTGCCGGCGTTACGGTGATCGTTT 534856 36 100.0 30 .................................... GCGGACCGTACTGCAGATCCTATCTTTGAG 534790 36 100.0 30 .................................... AGGCTTGGATTATTATTGTTTACCAAACGT 534724 36 100.0 30 .................................... TTACTAATTCCATACCTTTTCTTCAGATAC 534658 36 100.0 30 .................................... TCTCCTGTCCCCTTGTCATAACTGACCTTA 534592 36 100.0 30 .................................... TTCTTCTGGAACAGAATTATTGAATTGTTC 534526 36 100.0 30 .................................... CGGCAAGGAATCCATTCAACGTGATGCTTC 534460 36 100.0 30 .................................... CCGAATGCGGAATTAAACATTGATGGCATA 534394 36 100.0 30 .................................... AGAGAGCGCAGGAGGAAGAGAAAGCGTTTG 534328 36 100.0 30 .................................... TCAACAAATAACCGATGCTTTCACCTCCCG 534262 36 100.0 30 .................................... AGGCATTTCTTTTAATTGCCAACATCTCGC 534196 36 100.0 30 .................................... CGGAGTGGAAGCCGGACAAGCGGATAGCGG 534130 36 100.0 30 .................................... CCCGCCCTCTTTTTTGTACAGACGAATCGG 534064 36 100.0 30 .................................... ACAATTATTGCAAATAGTACTCACAGTATG 533998 36 100.0 30 .................................... ACCAGAGACGGGAACAGGCATAGGAAGTAT 533932 36 100.0 30 .................................... CATTTCCTGCATATTTTATTTTCACATACC 533866 36 100.0 30 .................................... ATTACCGGAGGGATAAAAGGGATTGGCTCT 533800 36 100.0 30 .................................... TGTATGAAAGCTATGGAACACTGTGCGACA 533734 36 100.0 30 .................................... ACCGTTACATCAACATCATGTAACAGGATT 533668 36 100.0 30 .................................... CTTTCTTTTCTAATTGCTTTCCTGAACGCT 533602 36 100.0 30 .................................... TTCCGGCGGTAGTCAAGGCTTGCGAAACAT 533536 36 100.0 30 .................................... TACCCCGGAGACAGGACAGCGGATGTCTAT 533470 36 100.0 30 .................................... TGTATCGTACGCCGACAAACTGCGACTTTA 533404 36 100.0 30 .................................... AATCGTTCTTTGCTTTCACAAATCCACTAG 533338 36 100.0 30 .................................... GCTTCTGCGCTAACAATCTGCCGAGTTTTA 533272 36 100.0 30 .................................... AGTACAATGATGGTACATTTGAGCTATGTG 533206 36 100.0 30 .................................... ATCAGCCCCCACATCTGTCGGATGGTGGAG 533140 36 97.2 30 ..........................C......... ACATTTTTGGCGACATCGGCGACACTGTCG 533074 36 100.0 30 .................................... CTGCGCTGTCTGGGCTGTCATCGTGGTCAG 533008 36 100.0 30 .................................... TAAGCTGTGATAATGCGATAATCGGGATAT 532942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.9 30 GTTTGAGAGTAGTGTAAATTTGTATGGTAGTTAAAC # Left flank : TTCAGATATAGAAAATATGACGTTGGCTTCAGAACGAGTGTTGCAATGGAATGAGTTTGTGAGTGAGATGGAAAAACAAATTGATTTTTTGACGCAAGATGTGGAGTATTCTCTGGATTACGATATGGAAATTACTGTGCGAGATTTTCTAAAACTAATGAATCTTCGTTTTCGACCAGAAGGAGAAACTTTTTTAGAATATTTGTCAGATGTTATTGCAATTTTTTCAGAAGTTTTAAAAATAGATTTATTCATTTTCGTTAATTTGTTTTCATACTTAGATAAGGAGGAACGAAGGCAATTATACGAAGTGGCAAATTATAAGAAGGTTAGTCTGTTGATATTGGAGGCACAGGATCGTTATGAGTATCTAAGAGAGGAACATGTTGTAATTATTGATAAAGATTTATGTGTTATAGAACCGTCTGTGTTATAATAAAACTGCCATATGAGTTTGCCCATATTTGTAGTGATATGATGCTCGGTGAGAACAATTTGAG # Right flank : TGGCGTACACGGTAAATCATAAGTACCAGCGTATTTTTTGACCGCCGTTTCCCGGCGGCCGGTTTACACATTTGTTGTTTTTGTTTTGCTCCGGCAGATTTCCGGCAGCTGCCCAGACCAGGGAAGCAGATCTTCCATAAAACGGTAATCCGTATCTTCCTGGTGGTCCTTCATCACTGTCAGGACGTATTCCAGATAGCGGAAAGGATTCAGGTTATTCGCCTTCGCCGTTTCTGTGATGCTGTAGACGATCGCACTGGATTTCGCGCCGTCGATACTGTCGATCAGCTTCCATGCATGCTTGTGCAGGCAGAAACTGCGCAGCGCGCCTTCCGTTGCGTTGTTATCAAGCGGGATTTCACCGTCATCCAGGAATACTTTTAATGCTTCTTCCTGGTTGATGCAGTAGTTGATCCCTTCCAGGGTTTTACCTTTGATCAGACGGCCGGATTCCCTGATCTCTTTTGCCCACGCAAAGAAAGCCTCCACCAGAGGTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAAATTTGTATGGTAGTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 551408-551013 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT990039.1 Massilistercora timonensis strain Marseille-P3756 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 551407 36 100.0 36 .................................... TGTCTTTATTTCATCATCCGATTTCCTCTTTACACC 551335 36 100.0 35 .................................... CAGGGTTTCGGGGTGTTTTTTCTTCTACAAGTTTC 551264 36 100.0 37 .................................... CAGCCGAATCCAGCGCTCCCCCTTTCCTCCATTGATC 551191 36 100.0 35 .................................... GTCAGGTCCTATCTTTAATATTCTTATCGAGACAG 551120 36 91.7 36 ...A........A..C.................... GCTATGCTTCCGTAACGTATCCTTTTTTCTTCCATA 551048 36 77.8 0 ...A........A..G......A......T..C.TT | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 94.9 36 GTTGAGGAAGAGCTAACCCCGAGAGGGGACGGAAAC # Left flank : ATTGATTTTTCGTTTTCTATAAATGATAATTTCCCATATTCCATGAATGACATTACAGAGATGATAAAATCAGGATTTGAAAAATATCAACAAGAATATTTGGCTAGTTATTCTGGGAGAATAGAATATCCTGAATGTGTTCTTCCTTTAGGCGGCGGAGTTGGGTTTATTTCTAAGACACTAATATATAGTATATATCCAAAGAGACAGGCCGTAAAAGTTGCCAGAGAAATATTACAGAAGCAATTTTGGAAACATAAGCATAAAACAGATGAAAAAATCTCTCCCCGGATGAGGAAAATGACACATTATCAGGGGAAGTTGTTTGATATGGGATTGTGTATATTCTCATGGGAAATAGATTGATTTTTATCCGTGTCTTGTAATTTAAGGGTTTTGCATTTTTTAAATCAAGTAATTGGTGCAAAGTATGAGAGAAAAATTTTTAATCCGCAAATGAATGTAGGGAGCCTGAATTTATGAGGGCTCCCGAGGGTAGG # Right flank : ATAAGATACAGGCATTAGTTTTGTGTGGTATGTGCATAAGAGATGTAAAGATCGTTTTGATACATATAAAGTTTATGGTAGAGAAAATAGAATCAGTGAAATGTATATATAACTTGAAAGGCGAAGATATGTTATGAGTTATCTATATTTATGTGAGAATGGTGCTGTCATCGGAGTGGAGGGAGGATACTTTAAGGTAACGCACAGAGATGGAAGCATTACTAAAGTTCCTCGAGAAACACTGGAGACGATTGCATTATTTGGCAATAATAATCTGACAACACCCTGCGTACAAGAATGCTTGAAAAGGGGAATTCCAGTAAGCTTTTTTTCGAGAAATGGAGCCTATTTTGGCAGGTTGGAATCTACGTGCCATTCCAATATATTTCGGCAGAAACAGCAGATTCATTTGTGTGAGGATTCACAGTTTTGTCTTGAGTTTGCAAGAAATGTATTAATGGCAAAGGCAAGAAATCAAGTGACGATATTAAGGCGTTATA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGGAAGAGCTAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //