Array 1 95602-94657 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNUH01000010.1 Escherichia coli strain 401629 401629_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95601 29 100.0 32 ............................. TCTATTCACCAAAAGAGGGTGATATTGTTATT 95540 29 100.0 32 ............................. ACGTCGGCACGAATTTTACCTGCTATTCGTCA 95479 29 100.0 32 ............................. CGTGTCTCGCAACAAATAGCGGGCGTCCGTGC 95418 29 100.0 32 ............................. CCGCACCCGTCCTCGTCGGCCAGCGTCCACGC 95357 29 100.0 32 ............................. CCGCGTCTCTATTCCGATTTGCCGCACTGCGT 95296 29 100.0 32 ............................. ATCGACATGCAGCGCGAACGGCTGCCCCTCAC 95235 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95174 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95113 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 95052 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 94991 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 94930 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 94868 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94807 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94746 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94685 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112288-111100 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNUH01000010.1 Escherichia coli strain 401629 401629_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112287 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 112226 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 112165 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 112104 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 112043 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 111982 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 111921 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 111860 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 111799 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 111738 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111677 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111616 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111555 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111494 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111433 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111372 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111311 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111250 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111189 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111128 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //