Array 1 923358-919008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVX010000001.1 Acinetobacter baumannii strain CriePir307 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 923357 29 96.6 31 ............................C CTCATCTCCCAAAATTCGCATAATGCAGATT 923297 29 100.0 31 ............................. AATCCGTCTGAAACGATTGCTGACAAGTTAA 923237 29 96.6 31 ............................T AATGACAACTGTAATCGTATGGCAGATGGAT 923177 29 96.6 31 ............................T AGTTATTTAGTTACAAGGCGTTTACAAATGA 923117 29 96.6 31 ............................T GTTTAATATAAGCGCAACAAAGGTGTAATTT 923057 29 96.6 31 ............................T CAAACAGTGCCAGCAACTCAGCAAATTGATG 922997 29 96.6 31 ............................C CACCAACAGGCTTGTTGTTAATCGCATTTAC 922937 29 100.0 31 ............................. CCACCACCGCCAATAGGCTTATTATTGATAG 922877 29 96.6 31 ............................T GTAGGTGGTCTATTACAGTAAGTAGCACCAC 922817 29 96.6 31 ............................T ACGCAACAGATGCAGCCGAATTACTCATCTT 922757 29 100.0 31 ............................. ACCACGGTCATTCTTATTCGGTGCGTCTGCT 922697 29 96.6 31 ............................T TCAGAAATTTCCTATCCATTTTACAGCCACT 922637 29 96.6 31 ............................T GATGCTAATGGGGTGCAGTCATGTCTTCAAT 922577 29 96.6 31 ............................T CAGTCTGGTTATCCTGTCCCTGTTTATTTTG 922517 29 100.0 31 ............................. ACTTTGAAATCTCGATCATTGAAACGAATCT 922457 29 100.0 31 ............................. CATTCAAAGAGGCTCAAAGGGTCCAGTCACA 922397 29 100.0 31 ............................. TGCATGAGTGACATAGATCGTTTCTGTATCC 922337 29 100.0 31 ............................. CTGGGAATGACATGCCTACGAAACGACAAAT 922277 29 96.6 31 ............................G TATTGCTTATGAGGCTGGTCAACAGTCACAG 922217 29 100.0 31 ............................. TCCGTAGACATAAAATAACCATCGATCCAAA 922157 29 96.6 31 ............................T TGTAACGTTTAGTAATGGCTTCCTGCTTAAG 922097 29 100.0 31 ............................. CCCCGAAGTCACGAATAAACTGTTCTGGTTT 922037 29 96.6 31 ............................C TGCGAACAATCGTGTTATTTATCATGAGCAA 921977 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 921917 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 921857 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 921797 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 921737 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 921677 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 921617 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 921557 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 921497 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 921437 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 921377 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 921317 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 921257 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 921197 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 921137 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 921077 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 921017 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 920957 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 920897 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 920837 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 920777 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 920717 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 920657 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 920597 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 920537 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 920477 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 920417 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 920357 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 920297 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 920237 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 920177 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 920117 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 920057 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 919997 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 919937 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 919877 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 919817 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 919757 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 919697 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 919637 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 919577 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 919517 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 919457 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 919397 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 919337 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 919277 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 919217 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 919157 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 919096 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 919036 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 73 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCATT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 928914-929420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEPVX010000001.1 Acinetobacter baumannii strain CriePir307 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 928914 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 928968 27 89.3 29 ...-...............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT GC [928974] 929026 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [929044] 929093 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 929153 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 929213 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 929273 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 929333 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 929393 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.5 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.07%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //