Array 1 827613-827315 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKS01000001.1 Campylobacter sp. P0140 ERR460791.12216_4_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 827612 36 100.0 30 .................................... TTTGGATTGCGGATTAAAGCTAAAAAATAT 827546 36 100.0 30 .................................... GAAGTAGCCAAAGCCCTAGCTAAAAAAATA 827480 36 100.0 29 .................................... CTAGCTAAAGCGATTAAATACGCACTAAG 827415 36 100.0 29 .................................... ATTTGCTTCAATTCTAAACATTTACCACA 827350 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 99.4 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTACCTAGCAAAGGAAATGTACGAATGATTACAATCACCGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTACGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGATATGTTATAAGATCTGAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAGATCAAAATACCATAAAATCATATCTATAAGAGGTTTCTA # Right flank : TTAAATTCAAAATTGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCGATTATGCAAAATGGATATTATCAAGCAACTGGTGCAATGGTGACTCAGTTTAACCGCTTAGATATCATTACTAATAACTTAGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTGGTGATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAGGATGCTTTACCGCTAGAAAATCACACTAAAGATTCAGCTAAATTTTTAAACCGCACATTAAATAGGGTGCCACATATCAATGAGGTTTATACTGATTTTGGCACTGGTGGGCTAAAGCATACTAATAATCCGCTAGATATATCACTTGGCAAAAATGATCTATTTTTACTAGTAGATAGTCCATCAGGTATAAGGCTGACTAAAAATGGCTCACTAAATTTAGATAGCGAAGGGTATTTAGTTACAAAAGAGGGTTATAGAGTACTGCCTAGCAACTATGCTGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 1094-1426 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJKS01000007.1 Campylobacter sp. P0140 ERR460791.12216_4_12.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 1094 32 90.6 43 A...............C.......A....... GCGGTATGTTTGCTGGTGCTGTAAATTTTAACTCAGATATATC A [1096] 1170 32 100.0 43 ................................ ACTTTATGTTCACTGGCGCTAAAAATTTTAACTCAGATATATC 1245 32 100.0 43 ................................ GTTTTATGTTCAGCGGTGCCACTAGCTTTAACCAACCGCTAAA 1320 32 93.8 43 ..A.........G................... GCGGTATGTTCAACAATGCCACTAGCTTCAACCAATCGCTCGA 1395 32 90.6 0 ..A....................AG....... | ========== ====== ====== ====== ================================ =========================================== ================== 5 32 95.0 43 TAGCTGGGATGTATCTAATGTAACTAATATGA # Left flank : AAACCTATACTCCCCAAATGGCAAACCAAAAAAAGTAGATAATAATGATAAAAACAAATATCTACAAATATCCAAAGATCAAATCACAAAGGCTAATAATCTAAAAAACAATATAGAAGCCGAGTTTCAAAAAGCCAAAGCAAGTATCAAAAATCCATTTTTAAGCCAAAGTGATATAGAGTTATCGCTTAGTAGCTATACTCTACCACTCAAAGAGATTAATAACGAAATTCTAAAAGCCAAAGAGTTAGAAAGTAAATTTGATACCAACTCAAAAACCATAGAAGAGCTTAGAGCGGAGCTAGTCACCAAAATGCAAAACCGAATATCCCAAAAAACTTCAAACCCAACCGAGTATAAATACCACCCAGAAACTAAAGAAGAGCTTAGAAAGCTAGTCTTCCGTGAGAGTGTAAAGCTAAGCGAGATAGATATAAGCAAAGTGAGTAATTTATCTAATTTATTTAATGGTAATAAAAGAAGCGATTTTAGTGGTATAG # Right flank : AACAATATGTTTTTTAGTGGAGCTGATGTTGTCAATACGCTTGCTACTGGTCTTTTTAGTGCTTTTGGTGCTGCTATGGGTGCTGGTGCTAAACAACAACTACCAAATAAAAAACGACTACCAAAATGGTATAAAGAATAATCAATAGGAGAGACAATGCAAGAACTACAAATAATAAACGAAATTTTATCAGCCAAGCCAAACAATCAAACTCTAAGCAGTTTCAATAAATATCTAAATAACTTTTATGATATTACCAAAAAAATAGCCGTAGAAAACGAAAGAGATTTGGTATTAAATTTAAAAGCTATTGAGAGTGAAATGGCTATTATCGCAGCTTATGCTGAGCTTTTCTCAAAGCATGTTATAGCAGTTGGCGGTGGATTTAGCGCAGGTAAATCAGCCTTTGTAAATAGCTTTTTAAAATCAAAAGATATCCAACTACCTATCTCTATAGACCCTACAACAGCAATACCTAGCTATGTAATGTCAAGCGATAA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGCTGGGATGTATCTAATGTAACTAATATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //