Array 1 11670-11025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMT01000042.1 Escherichia coli strain MOD1-EC5524 MOD1-EC5524_42_length_41430_cov_49.1372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11669 29 100.0 32 ............................. AGCAATCACTATTTTGATGTCGCGTGCAGGCG 11608 29 100.0 32 ............................. TCGTCGATATTGGCCAGATTGAATCCGCCCGC 11547 29 100.0 32 ............................. AATTCGGGCCACACGCGCGCCCGTTCATGCGA 11486 29 100.0 38 ............................. CGGCGCATCATTTTTTTACTGCCACGCTGGCGCTTTTC 11419 29 100.0 32 ............................. TGGCAGTTTTGCCACATCCATAGTTGTGGCAG 11358 29 100.0 32 ............................. TTTGCCACTGTTACGCGAGGGCGCATACGTGC 11297 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 11236 29 96.6 32 ............T................ TTCAGTGAGCCATAAAACCGCAGCTTATTTGC 11175 29 96.6 32 .........A................... TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 11114 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 11053 28 72.4 0 .AA........C..T....T-.G.....C | C [11028] ========== ====== ====== ====== ============================= ====================================== ================== 11 29 96.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38741-37369 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMT01000042.1 Escherichia coli strain MOD1-EC5524 MOD1-EC5524_42_length_41430_cov_49.1372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38740 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCACGCCCGAAGA 38679 29 96.6 32 ....A........................ GCATATTATGAACAGGATTTGCGCGGACGCGT 38618 29 100.0 32 ............................. CGCCGTGCCAGCTCCGGTGCGCCCATTTTCTC 38557 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTCCCGTCGCACCGTG 38496 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTCCCGTCGCACCGTG 38435 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTCCCGTCGCACCGTG 38374 29 100.0 32 ............................. CCCGCTGGCGGATACTGGATATTTTTACCACG 38313 29 100.0 32 ............................. ACCCGATCAATCAGTCGTTGTATCCAGCGCTC 38252 29 100.0 32 ............................. TACCCGAACCGCTCCCCGCACCATGCTTTATC 38191 29 100.0 33 ............................. AATTCCGAGCCTTTCGGATACGTTTCAGAACGC 38129 29 100.0 32 ............................. CATCACGAACCCGCTAAAGTCCATTCGGTAAT 38068 29 100.0 32 ............................. ATCCGTGCACCGCGCAGAATGCCGGTTTCTGA 38007 29 100.0 32 ............................. ACAAATGACACTGAGTGAAAAGCAGCAGCGAT 37946 29 100.0 32 ............................. CGGGGTGGCCCACCAGTCACGAATAAAAACCA 37885 29 100.0 32 ............................. ATGATTTTTGCACGACGTTCAACCGGCGTTTC 37824 29 100.0 32 ............................. CGCATCAGATGATGGTGACGGTGCCGAACAAC 37763 29 100.0 32 ............................. GCTACGAAATCACGGTAAACGACGGCAGCGAG 37702 29 100.0 32 ............................. CTTAATCAGATTCTGGCGGATACCACGCTCAC 37641 29 100.0 32 ............................. ACCACTGGCACGGAGGGATTTATCCGGGTGGT 37580 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGAGG 37519 29 100.0 32 ............................. GAATGAGGGACTAACACAAGTCCAATTTGCTG 37458 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 37397 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTATTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //