Array 1 1981-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDB01000091.1 Acinetobacter baumannii strain ARLG-1796 PR374_NODE_88.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1980 29 100.0 31 ............................. TACGGTACCACTTGCTGCAGCTGGGATGCCG 1920 29 100.0 31 ............................. TATTGCAATTGGGCATTAGAGAAATCAGGAG 1860 29 96.6 31 ............................T TCATGCGCTCGAGGCAATCGCCTAACATAAG 1800 29 96.6 31 ............................T CTGAAACATCCCATGCATTAACACGCTGATT 1740 29 100.0 31 ............................. ATCACCCTGATCGGCTGCATTGGCTTCGGTC 1680 29 100.0 31 ............................. TTTTCGAATGATCGTGCTTGGCAAGATGACG 1620 29 100.0 31 ............................. TAAAGGCAATTGGAAGCGTCCAAACGGTAAA 1560 29 100.0 31 ............................. CTTGATCAATCGCAAGGTAATGCGGTTGGTA 1500 29 100.0 31 ............................. AAACAGTTATTTATCTATGTATCAATTATTT 1440 29 100.0 31 ............................. TAACCCAACCAATTGCTTCAATTAGCTGTGT 1380 29 100.0 31 ............................. CCAAGGCCGTGTCAAAGGCGTGGGTGTGGAT 1320 29 96.6 31 ............................T TCACGAATCCGAGCGTCTAGAGTTTCAGGTT 1260 29 96.6 31 ............................T TTACTTAGCAGCCCAAATTTATTCTAACAAC 1200 29 100.0 31 ............................. TAATTACTTTAAGCAACAACCACAAGGCTTT 1140 29 96.6 31 ............................T ATGCAAATTTTAAATAGTTAAATTGCGAAAC 1080 29 96.6 31 ............................T ATTAAATCAGGCTGTCAAAATGGCGCGACTT 1020 29 96.6 31 ............................T TGATCTGAATATACGGTGCATAAGACGAATC 960 29 96.6 31 ............................T TAAGGGGTCAAACTATGAAATTAACCGATGA 900 29 96.6 31 ............................T CCGACTGATCCGCCTGACCAACCGCCTCCGA 840 29 100.0 31 ............................. TGTGCGATCATTAGCATTAGGTGCAGATTCT 780 29 100.0 31 ............................. CCATGTGAACATGCATGCATTGATGCAATAT 720 29 96.6 31 ............................T TTTTAGGCATGTGTGGCGGTGATAAAGCAAT 660 29 96.6 31 ............................T TGCACTAAACGCTTAGTTACAGACCAACCTT 600 29 96.6 31 ............................T GAGCCGTCAGTCGGTTTAAAATCAACAGCTT 540 29 96.6 31 ............................T AACTCTATTGTTGTTATCCCGACATCTATTA 480 29 96.6 31 ............................T CTATTTTTCCATTCGGCACATGCTTTTTTTA 420 29 100.0 31 ............................. TGACGCTGTTGCAGCTAAAGTCATTTCCAAT 360 29 100.0 32 ............................. ATTACCCCAATTACTGCTACAGCACCCCCAAT 299 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 239 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 179 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 119 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.4 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 7537-8043 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDB01000091.1 Acinetobacter baumannii strain ARLG-1796 PR374_NODE_88.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 7537 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 7591 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [7596] 7649 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [7667] 7716 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 7776 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 7836 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 7896 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 7956 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 8016 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 104-2773 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDB01000046.1 Acinetobacter baumannii strain ARLG-1796 PR374_NODE_123.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 164 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 224 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 284 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 344 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 404 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 464 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 524 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 584 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 644 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 704 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 764 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 824 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 884 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 944 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 1004 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 1064 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 1124 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 1184 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 1244 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 1304 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 1364 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 1424 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 1484 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 1544 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 1604 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 1664 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 1724 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 1784 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 1844 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 1904 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 1964 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 2024 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 2084 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 2144 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 2204 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 2264 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 2324 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 2384 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 2444 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 2504 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 2564 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 2624 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 2685 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 2745 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 45 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAGATGGCGTCAATTGAACTAAAAACATAAATACTTGAATTTTATAATATTTTGAATTTAATAAAAATTATGTGATACATATAGTGATACAAAGTCGATTTAATTAACTATGAAACCTGAGTTTATACAATTATCCCAACTTTTCACAAAATCTGTTTCATGATAGTAAATACTAGCTTTCAAATTATCTTTTAATGCCTTTTTCATTTCTAATGAACGTCCATCAAGTTGGTCATCCGTATATTCAAGATAGTAATATTTGAGTAAATATGAAAACCCTGAGCCATCTCTAATTGATTGACTATCCCCATATTGATCTGCAAACTTTGCCAAATTAGGGAAATCAAAACTGCTAGAATTGTATGACCACTGACCTTTGACATAAATAGTCAATAAATTCATAAAAGTATCTAAAAATTCTTTTTCAGACATTCGGCTAGGATTCATT # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69-517 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDB01000074.1 Acinetobacter baumannii strain ARLG-1796 PR374_NODE_27.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 69 27 85.7 32 TAA...-..................... TGCTCCTGACGAGCTAAGACGGCGCGGCCACT CC [74] 130 28 100.0 32 ............................ ATTGAAGAAATCAGGAAGAATGCTCCAGAGGG 190 28 100.0 32 ............................ AAACTAAAAATACAAATCAGTTGTTTTGATAT 250 28 100.0 32 ............................ TAGATTGTATGTAAATGATGCCAGTGCATCAA 310 28 100.0 32 ............................ ATTGTGGTAAGCTGTTGCATTAAATTTTATAT 370 28 100.0 32 ............................ TCATAGATAAATAGACAAAAGGGGCCGTTAAG 430 28 100.0 32 ............................ ATTGGATGCCATTACCCAATCCACCAAAAGCA 490 28 89.3 0 ..........A.G..............G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAGTCTAGTAATAGCACTGGCCATACTGACCGTGCTTTGTCCATGATCGCGTGAAGTTGTTTTTCAAT # Right flank : GTATTATTTTCAGTTATACTTATGCAAGCGAGATATTCTGTAAGTAATTCTTGTAATAAAAGCCAATTATTTCAGTGAGATAATTGGCTTAAGTGAGAGTTGCGATTATCCGCTAATTCGTCGGTCATCCCAATAACACGGCACTACAATCAAATGGTTCTCATGTAACCGTGACCATAATCGGACACCTAAATCCCGCTGCATATTTTGGACTGTGAAATTGGAAATCAGTAAGGTAGATTTCATATTGTCATAACGACTATATAGAACCTTATGTACCATCTCTAAGCGTTTTTCATGCCGGTCATGCAGGCCATATTCATCAATCACCAATAAATCAAAACTGGAGAAATGGTCGATGACTTCTTTCTCAGAGCGTGAAGTGTCTGACCAGGTATCCATCATTTTTTGAGCAATTTCTGCACTGGTATAGTAGCGTGCAGATTTTCTACTGTTATGCAGAATGTTGCGAATAATTGATGCACTCAGATGGGTTTTAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37482-31627 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGDB01000045.1 Acinetobacter baumannii strain ARLG-1796 PR374_NODE_12.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 37481 30 100.0 30 .............................. GTTGAATGCGTGACTCCAAACGATTAGCCG 37421 30 93.3 30 ............................CG ACTTTTCCAAGTCAGGATCGATGCCAATGA 37361 30 96.7 30 ............................G. ATGCAGCTGCAAACGTTAAAAATGCACCTA 37301 30 100.0 30 .............................. GGTGAGTCTTGCAAGGTAACTGCTTATGCG 37241 30 93.3 31 ............................GA TGCAATTATTTTCCGGACTAATGCCGCTGCC 37180 30 93.3 30 ............................TG AGAAGTCAAAACCAACTTCAATGCGAAAGC 37120 30 93.3 30 ............................TC CACTTCTACAAATTCACCGTTTTCATCAAG 37060 30 93.3 30 ............................GG GTTTTTTCGTATGAAGAGGCTGAAAAAATA 37000 30 96.7 31 ............................T. CTGAACGCCAGTGAGGCGCTCAGCTAGAATT 36939 30 96.7 30 .............................C CAAAGTCGATTAAAATCTCTTTTGGTTTGT 36879 30 96.7 30 .............................G ATATTGCCATCCCACGAGTACATCATGAGA 36819 30 93.3 30 ............................CC TCCTCGATCCGCAGGATTATTTACATACCC 36759 30 93.3 30 ............................TG ACTGCAGAAGAGTTAGCGGTGGGTTCTCGA 36699 30 96.7 30 .............................G TTACAGAGGGGATTTTCAATCCTGCCATGG 36639 30 93.3 30 ............................TA CAAACGTGCACTGAAATTCATTGTCCTCAG 36579 30 96.7 30 ............................G. GATCAATATTCAAAAATTCAAGCTTATCAA 36519 30 96.7 30 .............................A CTAATCGGCAATCCTCTGTCAGCTTGATAA 36459 30 93.3 30 ............................TA AATACAATGGAACAGAGACTGTTAAGAATG 36399 30 100.0 30 .............................. TCATTGGTGGTGAGGATGAGGACCAATGGA 36339 30 93.3 30 ............................TC ACCTGACCACTTGGATGAATGGTGCTTTAT 36279 30 93.3 30 ............................TG ATCGGTTGCACCTGAAGGATATTTACCAAG 36219 30 100.0 30 .............................. CTGAAACTGAGCCTCAGTCTTAAATGGAAC 36159 30 93.3 30 ............................CA TGAAGATTACACCCACATGATCATTCATCC 36099 30 93.3 30 ............................CA AAAAATTAATAACTATTAACCCGCTTCCTC 36039 30 93.3 30 ............................TC GCAAAATTAGTGAGAACAAGACTGTTTATC 35979 30 96.7 30 ............................T. GGGGTGACATACCCGCTAGACCATTTTTAC 35919 30 93.3 30 ............................TA ACGTGGTCAAGCCGCCGAAGATTCCTGAGA 35859 30 93.3 30 ............................TC TTACCGTTCCATCTCTTCCAATTGAGAATA 35799 30 93.3 30 ............................GA ATAAACATGACCAGCATCATAGCCATCAAC 35739 30 93.3 30 ............................GG CTTTGCAAAACCTCTTTTACAACGAGCTTT 35679 30 93.3 30 ............................CA GACATTACAGCCGCCCCAGTTGCTTCCACC 35619 30 100.0 30 .............................. TAAGGGGCGATGCTTTATTGATCCAGCCAC 35559 30 96.7 30 .............................C CGAAATGGTACCAAGTCTGAAAACCGCATA 35499 30 96.7 30 .............................A TGACAACTGATCCACCGTTTTGCCAAGTTT 35439 30 93.3 30 ............................TG TCCCTGCTGCAATCATTTCAAGAATCTTTT 35379 30 93.3 30 ............................TC TGAGATGTACGCTAAACAATTCACGAATGC 35319 30 93.3 30 ............................TG AATTTTACAAACTAAAGCTGGACGGAAAAT 35259 30 100.0 30 .............................. CGATCTTAGCACCAAAATCGTAATATGTAG 35199 30 96.7 30 ............................T. GAGCTCTCTCACAACTAAGCGAATTTAAAT 35139 30 96.7 30 ............................T. CTGGAAAGCCTATTATGGATAGGATTATCG 35079 30 96.7 30 ............................T. GAGCACGTTCACAGCTAAGCGAATTTAAAT 35019 30 96.7 30 ............................T. GTGATTGGCGCGAATCTATTAACAAAGAAC 34959 30 93.3 30 ............................TC TTGAAGTCGAGTATAGTTTTTAATCTTATG 34899 30 93.3 30 ............................CA CCAAAATGGAGGGGAGACTACCCCCGAAAA 34839 30 100.0 30 .............................. AGAGTTTTCGAGAGTTCGATTAAGCACATA 34779 30 100.0 30 .............................. GTGAACGGCCAAGCATAATAATCAGGCCAT 34719 30 93.3 30 ............................TG TAAGTAATGGCGCACATCTTTTTTAGCTGA 34659 30 96.7 30 .............................A AGCCTGAATTGATTGAATCGACGATCTGAT 34599 30 96.7 30 .............................A CCATACCAAGCTGCAAACACAACCGCACAG 34539 30 96.7 30 .............................C ACCAGTTACAACGTAATTACCATCCAAGAA 34479 30 96.7 30 .............................C AAAAAGCTAAGTCTTTGGATGGGTGATGTT 34419 30 93.3 30 ............................CC GAAAATTTGTACCGCCGATGTTACACCAAT 34359 30 100.0 30 .............................. GAAGCTAAGAAATGGGAACACCTGCAAGAT 34299 30 96.7 30 .............................C GTAAAAGGACTTTACGGTTTGGGTCAGCTT 34239 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 34179 30 96.7 30 .............................A CAACACCAATACCTCTGTTAAAATTTTCTT 34119 30 96.7 30 .............................C CAAACTTCTGTTTTAACTCTTCGCGTTGTT 34059 30 93.3 30 ............................TC TGGATGTGGCCAAAGCAATTTATCGCAAAA 33999 30 93.3 30 ............................TG TCACAGATTCATAGTGCTTTATAGCTAAAG 33939 30 96.7 30 ............................T. AAATTGTTTTGCATGAAGGTAGCTCGCATG 33879 30 96.7 30 ............................G. GAATATCTCCAACTGCATACAGCTTGCCTT 33819 30 96.7 30 .............................A AACCATCCACAGGGTAACCATTAGCAATAC 33759 30 93.3 30 ............................CG ATATACGACAGGCTTCAAGGCGACCACTTC 33699 30 96.7 30 ............................T. CTGTTAGCTCTGCTGGATCATCAACGCCAT 33639 30 93.3 30 ............................GA ACTGAAACAGTAACCCTCAAATGTTTAAAT 33579 30 100.0 30 .............................. TTTCAGCGAATGGTGTTGTAATTAGTGTTG 33519 30 96.7 30 ............................T. TTGCAATCATGATCCGGACGATAAAAAAAT 33459 30 93.3 30 ............................GC TTAAAGTTTGGATGAAAGCGCATAAGGGCG 33399 30 100.0 30 .............................. GACGAACCTGTCTTACCTTCAGATCCTTCT 33339 30 100.0 30 .............................. ACACTCATCGCGATTCTATTAAAGTCTGTT 33279 30 96.7 30 ............................T. CTTTCCCGATGCTTCAAGTGTCTGGTGAGT 33219 30 96.7 30 .............................A AATGAGAAATTCATAACCATATACCCCGAG 33159 30 93.3 30 ............................TG AAGAGTTAATCAATATTATTTCTTGCTCTG 33099 30 93.3 30 ............................TA TGAGAAAGAAAAAAATTGCGACAAAGATAA 33039 30 93.3 30 ............................TA CTTGGGAAGAGCGTTGCGGGGCTATTTCTT 32979 30 96.7 30 .............................G CTAACTTACCACCGTTTGCAAATGTTTATA 32919 30 93.3 30 ............................TA AAGATACGTTTTTAGCTTTTAATGTGATTT 32859 30 93.3 30 ............................GC AAAACTTAAAAAAGCAATCCAGACGCATGC 32799 30 100.0 30 .............................. TAGCTAAACCTTCAATCTCGCCTTCAGCTA 32739 30 93.3 31 ............................CC CTGAAGACACTTCTTTGAAACGCAACGTCAC 32678 30 100.0 30 .............................. GTCCATTTTGCGGATACGCAGATGGGTTAG 32618 30 96.7 30 ............................T. CCCCCTTGAGCGCTTCAACCATCGCCTTAA 32558 30 96.7 31 .............................A ACTTAGATGACAAAGTATTAAAGCTCTGTGA 32497 30 93.3 30 ............................GG GTATAAGTGAAGTAAGTATCTTGAGGAATA 32437 30 96.7 30 .............................A TGGATGGATATGGCATAGGCAAAGACGGCA 32377 30 100.0 30 .............................. AGAGAATCGGTACTGGATAACCTTGAGCGG 32317 30 100.0 30 .............................. CCTGAGCGTCGTTGGAAGGCGGACTTCCGG 32257 30 96.7 30 .............................A ACTCTTGCAAGCTAGCAAGATAAGCAGGAT 32197 30 96.7 30 ............................T. GAGAATTATGAAAAAGCAGGCTTCTATGAA 32137 30 96.7 30 .............................A CAGACATACTTCTTTCATTTGCATCGCCAG 32077 30 93.3 30 ............................GA GGCGTAAAGATGCGGTGTTGATCTTGCACG 32017 30 93.3 30 ............................TA CGTAATAAGTACACGGTGCAATCGGTGCGT 31957 30 93.3 30 ........................A....G AGTTTTAAACCCGCGCTACACCTTTCTAAA 31897 30 93.3 31 ............................CC AAAAAAAATAGCCCTACGTTTAAGCATCGAC 31836 30 96.7 30 .............................A CGTGAACAATTGTTTTAGCTTTGAACATTA 31776 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 31716 30 86.7 30 A.....AA.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 31656 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 98 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAACC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //