Array 1 63301-62784 **** Predicted by CRISPRDetect 2.4 *** >NC_020504.1 Streptomyces davaonensis JCM 4913, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63300 29 96.6 32 .............G............... CACGCCGGGTCCGGAGACGACGACGTCCTCGC 63239 29 100.0 32 ............................. AACCCGGACGGTTTCGGAAACGTCACCACGGG 63178 29 96.6 31 ........................A.... GTCTCGGACTCTGCCAGGCGATCACGATTAT 63118 29 93.1 32 ...T.......C................. GACAAGCTGTTCTCCTCCTGGTCCGGGTTCAT 63057 29 96.6 32 .................A........... GTGATACGGCGAGGCGCAGCCCTACCGGTAAC 62996 29 89.7 32 ......................GCA.... CGCGTTGAAGCCCTGTCGGGTGCGACCGGCAA 62935 29 93.1 32 .............A.C............. CGGCACAGCGCCGCCGACACCCGCTCGATCGC C [62917] 62873 29 93.1 32 ...........C........T........ ACCCACGCCGCAGCGTTGTAGGCGTCCTTCTC 62812 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.0 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGCGCTCACCGTCAAACCGCACGTGATCACGGTCGACCGCACCTTGCGCACCGGCGACTCGCTCACCTTCCGCGCAGTCGTCAACCCCACGCACAACCGCCCGGCCGGGCCGCCGGCTCCAAACCGCCCTCGCGGCCGGCGAACCGCTCACACCCGCCCCGACCACGTCAAGAACTGGTTCGTACGCCGCCTCCAGCCCCCCGGCGAACCACGCACAGCACCCAACGGCCTGACCCGCATCGGCGCCACAGCCGAAGAAGAGTCCCTTGCCGTCCAGATGCTCCCCACCGTCACAAGCCCCGGCCCCCACAAGGGCCTGCGCATAGTCCGCGCGGAAATCCGGGGCACGCTCACGATCACTGATCCTGCCGCCCTGGTCGACGCCATGACCCAGGGCATCGGGCATGCACGGTCGTACGGCTGCGGACTGCTCCTGACCCGGTGAGCGCGCCTGCCGGGATCGTCCCCGCACGGGCGAGGATTTGGCAGGCGGCCGGGA # Right flank : TGGGAGGCCAAGTACGCAAAGGCCGCCACCCTGTGCTCCCCGTAGGGCAACCGACGGAACTCGCTGACCTGCTAAAACGCGGCGTCTGTGCGGCGTAGGCCCCGTATTGGGTGGTGGAGATTCCCGGTGTGCAATCGGCGGCGGCTGTCGCCGGCCGTGAGCGTCGACGAACCCGCCGTGGCGGACCAGACCGATGATCCCTCCGGCAATTCGTCACCCTGGGAACCGCATTTCGTCGGCTCCGCCATTCGGGCGGCAAGTGCCAGTGCGGCGGCTTCCTGTCCGGCGACGGTGCCCACTGAGTAGAAGGTGAGGCCCAGCTCGTCGAGTGCCGAGGATGTCGCCGAGCTGCTCCTTGTTGAAGCCGTCGCCCAGCAGCTGATGAGTGAGCCTCGCGTTAGGGTTGGCTCATTCTGTTCTGCTGCCACTGGCCGTTGACATCATCGAGGATCGTCTGGCACTGGGTGTGATAGTCAGTCGCTCTCTTGGCCCCGGTGGGT # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79212-79902 **** Predicted by CRISPRDetect 2.4 *** >NC_020504.1 Streptomyces davaonensis JCM 4913, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 79212 29 96.6 32 .........................C... AAGGGCATCGTCGGCGTCTGGAACAGGGTCGC 79273 29 82.8 32 G..........GGGT.............. CGTGCGACCCCGGGGGAGACCTATGTGCATCC 79334 29 96.6 19 ...............A............. GCCGTACCAGCCCAGCGGC Deletion [79382] 79382 29 69.0 32 .G.AAG.G...CA.T........A..... CTGTCGGAGCGCAGGGGCAAGACCGCCGCCGT 79443 29 100.0 33 ............................. AAGTGGGAGGACGCGGGCACGGACTTCCACCGC 79505 29 93.1 32 ...T.....A................... CCGGCAGCGTGGGGCAACAAGCGCAAGGGCTA 79566 29 96.6 38 .....T....................... TCCTCCACGAGGGCACGGGATTCACGGCGGGACTGCTC 79633 29 93.1 32 ........T.T.................. TGCACCATGATCTTGCCCGGTTCCTCGATGCT 79694 29 93.1 26 G........................C... AAGGGCATCGTCGGCGTCTGGAACAA 79749 29 65.5 32 GGT.G.GTGCTC................. GGGGCGCTCAAGCCCGGGCTCGAGTACCTCAA CA [79766] 79812 29 93.1 32 G..........G................. CACCCCGAGGCCGAGCACTGGATCGCCGACCT 79873 29 89.7 0 G..........................GG | T [79897] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 89.1 31 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCCAGCTCGCCGGGCCGATAGACCGTGCGCGAGACCGGATCGACCGGGACATAGGCCGGCCGCAGTTCGCGGATCCGGTCTTTGAGGATGGTCATGCCTCTCTCCCAGCCGATCCGCTCGGCGATCACCGTGGCGGGCATCGTCGGGGTCTCCCGCAGCAGTTCCCGGATCTGCGTCTCGACCGCGTCGACGGCCGATCCCTTGGCCGGCCGCTGGTACTGCGGCGGCCGGTCGCTGGCCAGGGCCCGCTTGACGGTGTTCTTCGAGATGCCCAGATGCCGTGCGATCGCCCTGATCGGCATCTGCTCGGCCCGGTGCAGCCGGCGGATTTCTGCCCAGTCCTCCACGAGGATCACCTTCCCTCCTGACCTTGATCACCAAGGCCAGAGTCAGACGAAGATCACCAAGTGGGTCACTTTTGATCCGCCGTCAGAAGGTCAGCGTTCGGCCGTCGTCGAGAATGGTCCCGGCCGCCTGACGTACGGCCTTGAGTACAAGAT # Right flank : GCCCCATTTCTCGACGACGGCCGAACGCTGGTTCTGGATCACTTTCCGTGCCGGAGCCACGGAGGGTCACCACGACCGCGATCATGAACGACCTCACGCCGCGAGGAGGACTCGCTTGCGGAGCAGGTCGAAGTTGGCGCGTCCGAACATCTGCCGCTTGATCATCTTGATCTTGTTGTTGTGGCCTTCGACGGCGCCAGAGCTGTAGGGCAGGCTGAGCCCGGCGACCACGGCGGCGAGGTCCTGGCCGAGGCCGGTGACGAAAACGTGCAGGGCGGGCAGGTCATCGGCCTGGACGCGCTCGATCCATTGGGCCAGCTGCTGTCCTTGGCGGTTGTTCATCAACTCAGCGAAGGAACGCACGTGTTCGGCGGTGCGGTCAAGTTCGGGGCAGCGGGCGAGGATCGTCTTGAGTCGCTGGGCCTGGTCGTCGTCGAGGCGGTCGGGGCGGCGGGTGATCCAGCTGGTCACGTCTCGCACGGAAGGGGCTTTGCGAGGCG # Questionable array : NO Score: 3.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.11, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //