Array 1 148-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXN01000040.1 Clostridium thermopalmarium DSM 5974 CPAL_contig000040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 148 30 100.0 34 .............................. CAACAAACTTTTCATAACTGTTCGTCGTCATAGC 212 30 100.0 36 .............................. GTATCTATTTGATGTACATAAGTTAAAACCAGTTTA 278 30 100.0 36 .............................. TGTCGCTCCAATAGTCATAATAAGCATATTCAACGT 344 30 100.0 35 .............................. TACAGGGAATAACGGTTAGGGAATTATTAGGAATG 409 30 100.0 36 .............................. GATAAATACTTTTTATGGGGAATATAATGAATACCA 475 30 100.0 35 .............................. GCGACTATAGGGGAAGTTACCCTTGTAGCCGATAT 540 30 100.0 35 .............................. CAGGACTGCAAGGTTAAAGGCTTTTACAAGAAAGC 605 30 100.0 36 .............................. GTATGACCCATGTCAAGGGATAGAGGAATGCATGAG 671 30 100.0 35 .............................. ATTTATCTTCAATATTCCCTGGTTTTAACCAATTA 736 30 100.0 35 .............................. GAGAAGCGGAAAGTGTTTTATAGGAGAATATTTTA 801 30 100.0 36 .............................. TTTCACGTAAACGTGATATAATATAAGTATAGGATA 867 30 100.0 36 .............................. TGTTTTTTTAGGTGATATTTGATTGTACATTTTTCT 933 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 100.0 36 ATTTAAATACATCTTATGTTAAGGTTCAAT # Left flank : TCTACAATTGTCTTTCTAAATTCTTCTGTATAATACTTTTGCCCTTTTGCCATTGTAGACACTTCCTTCCCTTTTTATATTTTAAGGTGTTCGGCTTTTTGTGTCTACACTAATATACTAACACCAAGGAGATAAATTTTATATCAAA # Right flank : TCTTTGCAAATAAGCCATTCTCGTTTTTTATTTTACACCAAAAATATAGATTTACTCAATAGTTTACAATATTTTTACCAAGTGAATTTATAATGACTAAATTACTTATATAAAATTTAATCAAATGCTTATATCTACTACATTTCATAATACTTCATAAATTCAATAGCCTGGTAAAAACTTTATCAATCTATATTATTAAATCTTCTCCCGTATTGCTTTGCTTATTTCCTAATACTTCTTCTCCATAGACATTATTATTCATTAACTTTATAATACATACAAAATCCTCATTTTCATCTATTACCTTCTTTAAATCTTTCTTAAGTAATATGCAGTTTGCTGGTGCTAATTCTCCTCTAAACACAGACTTTTGAAAATGAGATAAATACTTTTTACATATCTTAAACACCTTATTTACTCTTTTTTCACCTACATCATAAAAAAGAAATGCGTAGTTATAATTATAATTTTTACTCATTTACATTTTCTCCTTTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 107154-104567 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXN01000037.1 Clostridium thermopalmarium DSM 5974 CPAL_contig000037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 107153 30 100.0 36 .............................. TCATTTTCTCGTCACGTTTATAAAGTAAAGTCTACT 107087 30 100.0 37 .............................. TCATTTGCATTGACAAGTTTAATTTCTTTATACCACC 107020 30 100.0 36 .............................. TTCTTAAATATCTTCTTACGTTTCTTTCTGAATTGG 106954 30 100.0 36 .............................. GGTGGTAAATAAGTTTGATATAACTCAATCTATAAA 106888 30 100.0 37 .............................. CTGACACAACAGTTTAATGATGGAATCGTTGATATTT 106821 30 100.0 35 .............................. TGTTAAACTCCTTTGTTGTTCACTACTATTATTCC 106756 30 100.0 36 .............................. CATTGGATTGCATGGAAATAATAGAAGCTCTAGTAG 106690 30 100.0 34 .............................. TTTTGAGAGATGCTAAAATGCCTGCAACTTTAAT 106626 30 100.0 36 .............................. CCCTTTTGAATCTCCTTACTGTTGTTAATTATATAC 106560 30 100.0 36 .............................. ACAATTATTTTTATATTTTTATTTGTATTATGCTTA 106494 30 100.0 37 .............................. TTCCTGCCAATCGTCCACATTCATTGACTCTAATTCC 106427 30 100.0 36 .............................. TGTTAAATAATAATACTAAAATAAGTTCGTAACAAT 106361 30 100.0 34 .............................. GCAATATTGTATACTTCTTTTAATTCTTCAATGT 106297 30 100.0 34 .............................. GGAAATTCCTTCTTTATCAATCTTGATGAAGCAC 106233 30 100.0 36 .............................. CGAATTATATGACTTTGATGACGACACCGAAATTAA 106167 30 100.0 36 .............................. ATTAATTGCTTATCTTGATTATATTATACCGTATAT 106101 30 100.0 36 .............................. TCTAAACATTTCTTACATATACTCTTACCCTTATAA 106035 30 100.0 37 .............................. GGTTCTGCAAACTGCACTCTAGTAAGCCATACAGCAA 105968 30 100.0 36 .............................. ATTATTCCATTTGATTCTGCTTGGTTATCCTGTTTT 105902 30 100.0 35 .............................. GAAGAAACTTTCTGCATTTATCCCAGTGGCTAAAG 105837 30 100.0 35 .............................. AATATCTTGGGCTGGGAATATTGAAAAGATAGAAA 105772 30 100.0 35 .............................. ACTTTCTCTGCTACTGTTTCTTTAGGTATTGAACC 105707 30 100.0 36 .............................. TCAAACCCTGCACCTGGTGTTCTATTAACTGCACCT 105641 30 96.7 34 .......A...................... TCTAATTTTATAGTTAACGAATTATCTACACTAG 105577 30 96.7 35 .......A...................... CTTTTATTACTGATTATTGTAGTTTCCGTAGTAAC 105512 30 96.7 35 .......A...................... TTATTTAGTAGTGGCGGATTTTCCGACGTCGGTTT 105447 30 96.7 34 .......A...................... TACTTAATTATTGTCCTTACATTTACTCCCCATC 105383 30 96.7 36 .......A...................... GGAGCAGATGCTACAGAAAAATTATCTTCTATGGTT 105317 30 93.3 35 ......TA...................... ATTTGTTTTACAATATCAAGCATTTTATTACCTCC 105252 30 93.3 36 ......TA...................... ACGATAGCAGCTTCAAGCTCTGTTGCTAATGCTTCA 105186 30 93.3 36 ......TA...................... AGAACAAGTTACAGTAAAAATTGAGTTAGTTCAAAG 105120 30 93.3 36 ......TA...................... ACCTCTTTACCTTTAACACCTTTCAATTTTGTTTTT 105054 30 93.3 36 ......TA...................... AATACATTTTTATGCCTTCTTTTTTCTCTGTTGTGC 104988 30 93.3 34 ......TA...................... AAATGAGTTATAATCCTCGTTGCACATCTTTCAA 104924 30 93.3 36 ......TA...................... TTATTGTTTATGAATTCAACTCCTAAATTTTTAAGC 104858 30 93.3 35 ......TA...................... TATTATACAACCTCCATATTATTTATATCAAAATT 104793 30 93.3 36 ......TA...................... TTCCTCCTTTTACTGTTCTTTCCTCCAGCCTTCCAT 104727 30 93.3 36 ......TA...................... TGGTCCATTTAAGTCAAATCCAGCAGTTGTTATGAT 104661 30 93.3 35 ......TA...................... ATAGTACAAGCGGAAGATTTATCTCTTGTAATATA 104596 30 96.7 0 .......A...................... | ========== ====== ====== ====== ============================== ===================================== ================== 40 30 97.7 36 ATTGAACCTTAACATAAGATGTATTTAAAT # Left flank : TGAATATATAGAATCCTGGTACAACAGAAAAAGGCTTCATAGCAGTATCGGTTATATGACTCCTCAACAGCTTGAAGATGCTTTAAGAAAAACTGCATAAAAATTTGAGTTTTTGTGTCTACTATATTGACATAAATCCACCTTCTTTAATATCTGCAA # Right flank : CTGACACAATCCCATGTTTTAGTGCCTATCAGCTCTATGGGGAAGAGAGAATTATGATAGCACTTTTTATTTACAGTATGCCATTAATAGCTATTGTTTTTTCGTTGTTTTAAAATGATTAGAAATGTTATACGTAATGAAGATAAGTATATTACTACTACTTATGGTACTTTATCTTTAGCCTATATTGTTTTTGGATAACATTAATATATTATTAAATATCTACTAAACTAACTAATAGAATATATAAGCTTAGTTACCTGAAAATCTATTTTTATATAATAAAATTTGTAAAAGGGAGATAAAATTTTATCAAATAAAAATATTTAAACAATTTAAAGGTACTGAGGAAGAGATGGTTGCATTATCAGCAACTTGTATAGGATCACATTCTCTAGGTTATGTATATAACAGTGGAGCAAACTCATATGCAAAAGTGAATTTTACATTTTCTTGGTCTGGAGTACCATTTGTGTCAGGAACAGATGTTGTAGCAATGA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : ATTGAATATTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //