Array 1 223905-226196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZDJ01000018.1 Moraxella catarrhalis strain CCUG 18283 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 223905 28 100.0 32 ............................ TTGCCCCAGAGCGTTTTGTACTTTTTTTAAGT 223965 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 224025 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 224085 28 100.0 31 ............................ ATATCGCTAAAACTGTGCCAAGCGTATCATA 224144 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 224204 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 224266 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 224326 28 100.0 32 ............................ GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 224386 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 224446 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 224506 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 224566 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 224626 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 224686 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 224746 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 224806 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 224866 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 224926 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 224986 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 225046 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 225106 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 225166 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 225226 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 225286 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 225346 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 225406 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 225466 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 225526 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 225586 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [225629] 225629 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 225689 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 225749 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 225809 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 225869 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 225929 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 225989 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 226049 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 226109 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 226169 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 39 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //