Array 1 85938-87246 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNO01000001.1 Levilactobacillus yonginensis strain JCM 18023 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85938 29 96.6 32 ............................C GCTGACCTTGGCAGAGTAACCCGGCAAGAACA 85999 29 100.0 32 ............................. CCTCCCACACTGTGAACACTGGGCTTTTGTCG 86060 29 96.6 32 ............................A CTTTTGTGGCTCGACCCGCTCTGCTAGTGGTG 86121 29 100.0 32 ............................. TCGACCATGCCGCGAGTAATCATCTCGATTGT 86182 29 100.0 32 ............................. CGGGTTAACCTGTACCTTGGCAATCACTAACG 86243 29 96.6 32 ............................C CACCACAGGGGAGCACAAACCATACGACGAGG 86304 29 100.0 32 ............................. TTGAAAACAGAGTAAGGGATTTAAACGATTAA 86365 29 96.6 32 ............................C AAGTCAGTTGAATAATGCTTAGTCATGGCGAT 86426 29 96.6 32 ............................C ATCGTTTCCAACCTTTACCCAGATCTGACCTT 86487 29 96.6 32 ............................C GTTATATGGCCACCCTTTAGGCAGGGTGGCTT 86548 29 100.0 32 ............................. CATCGCAAGGGCAAGTGGCTTAAAATATATTG 86609 29 100.0 32 ............................. ACTAACACGAGGTGAAAATTATGGCTAGCAAA 86670 29 100.0 32 ............................. CATTGCCAGCCCCTTTGCAGTTATGAGTCACT 86731 29 96.6 32 ............................C TCGTTGCCGACAAGTACGGCACCCAGGTGTTT 86792 29 100.0 32 ............................. TACTTGCCAGAGTAGGGTTTCGACTTCCGGGT 86853 29 96.6 32 ............................C GAAATGCCAAAAAAGCACAAGCAACACCGGAA 86914 29 100.0 32 ............................. TAAAAATTACACTGACCATAACTTCTACGCTG 86975 29 96.6 32 ............................C CCCGTGACCATTGTGTCACTGCTGGCCGGCTC 87036 29 100.0 32 ............................. GGAAGAAACACGCTCTATTTTTGTCACTCATA 87097 29 100.0 32 ............................. GACATTCACTATTGGAATAGTGGGAAGGCTGC 87158 28 86.2 32 .....T.....A.....-..........C AGCTGGTCAAGGATTTGGATTGTGCTGTCACG 87218 29 75.9 0 ..G...T...GA....C..A......T.. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 96.9 32 GTATTCCCCACGGATGTGGGGGTGATCCT # Left flank : ACAAGGACGTCACGGGTGGCGATGCCGCGACGATTAGTAAGATGCCAACTGCGAAAGCTAAAGGAAATGCGGTGGTAAACTTAGAGACAACTAAGTCAGTGACAGCCAAGGAAACTTTGCCACAGACGGATGAAAAAACAGTCTCGCCGTTGTGGGGATTGGCTGTATTGGGATCATTGCTGGGATTAGCGGTGATTGGACGTAAACGGAAGAAATAATTTGGAATTTTTGTAGGGAATCGGTCGAGGGCCGGTGCCCTTTTTTTGTCTAGGGTTAAGCGGAACCATTAAACAGAAACTGTTGAAGAATACCGTGAGGAGGTTAATTAGAAGATAGTTGCAATGTAATTTTGGGTCATAAATTCAGTGTGAAATTTAGTTTATGGGTAGGTATTAAATACATTGTTAACTAGGTGCTTGTCAGGTATGCTTGAGAAGCAAACTAAAGGAATTTAGGTGCCTGGGAAATTTTGAATGCTGTTAAATCAACGTTTGTTTAGT # Right flank : TGATATGAAATTTGATGGTTATGAAGGCGATGGATGTGGTTGTACCAGCATTATTATTTCGGGTTTAGTATTATGGTTCCTACTTAAATGCCTACTGTCATTGCTATAGCATTCTCCATAGATGTAGGGACAAAATAAAGCGGTAAAAATGAAAATATGATTTATGAACATGTTTTCATTTTGCTTTTTGACATATTTTTCTAAAACATTATGACCTAATCTTTGACTAGTACTGGGACCATTACATAAATTACCTGTGCTTGTATATAGCGACGTATCAAGTATCTATCAGTAGATACGTTTCAAAAGAAAAAACAATAAATAAACATTATGAATTATTTTGTCGATTTACTACATTGACGTAAGAGTACTTAATCTGTATTGTTGGTAAAAAGAAAGTAACTACGTTGTGACATTTTTAAACTGTTGAAGGTATTTTTGGCAAACTTGATACGAAGGGAGGTTGGGTAATGGAACTATCTAAACAAGCCAGCGCTTTA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 97115-97937 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNO01000001.1 Levilactobacillus yonginensis strain JCM 18023 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97115 29 100.0 32 ............................. TAGTCGCCGAAAAGTACGGCACCCGGGTATTT 97176 29 100.0 32 ............................. TATTCAAATGAGATTTTCAAAAACTTTCCTCC 97237 29 100.0 32 ............................. CCCGTTTAGTTGCACTTTCACGCAATCATCAG 97298 29 100.0 32 ............................. GAGGTGGAATAATGAACGCGAATTATGAAGCA 97359 29 100.0 32 ............................. GAGGTGGAATAATGAACGCGAATTATGAAGCA 97420 29 100.0 32 ............................. GAGGTGGAATAATGAACGCGAATTATGAAGCA 97481 29 100.0 32 ............................. GAGGTGGAATAATGAACGCGAATTATGAAGCA 97542 29 96.6 32 ............................T CGCTTTCCGCGGCTTATGCCGCCCTATCTTAA 97603 29 96.6 32 ............................T GCACGAGTTGACACCTGATATGGGGTATGACA 97664 29 93.1 32 ..........................T.T CAGTTTGAAACTATACCATTTATCTTTTTCTA 97725 29 96.6 32 ............................T ATCAGAGCATCGCTTGAGATTCGATCAGGAGG 97786 29 100.0 32 ............................. GTTGACCTGACCGGTATCACGAAGAACGGGTA 97847 29 100.0 32 ............................. GTGGATGGCAATACCAATATCTTTAAGGTTAC 97908 29 96.6 0 .....................T....... | T [97933] ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : ACAAAAGATGAAATTATCTCAATTGGCGCGGTTAAACGTGGTAAGGATAATCAAATTACAAAATTTTATCAGTTGATTCAGACCGATGAAGTGCTCCCACAAAAGATTGTGACACTGACGGGCATCACGGATGGGATGCTTGCTTCACAAGGTGTCAGCTTGAAAGACGGTTTAAAAGGATTACGAGCTTTTATTGCGGACTTTGAGGTAGTTGGCTACAATCTACGATTTGATGAAACGTTTTTGACCGTTGGGTTTAGGAAAATTAAGGAACCAGATTTAACAAATCGGATGATTGATTTGATGCCCTTAGTTAAGAAGGCCAATAAATTCTTAGATAATTATCGGTTAGACACAGGTTTAGACGAATACGATGTCGAAAATCAACAGCCACATAATTCATTTTCAGATGCTCAAGCGACATTAGAGTTGGCGACTAAACTGAAGGAAAAAGGGACTTTTTGAAAATTCAGATGCTGGTATGGCGGCGTTTCTTTAGT # Right flank : CTTAGCTGATGAATAAAGTATAACGACGTTAAGTGTTCCCCACAGCAGTAGGGCAAAAATTTTAAACCCACCAAAAAGAGTAGCCAGGCAAGCACAATCGCCTAGCTACTCTTTTCGAATAAACAACTAAATTTACCCATTCAGCTGATGATGCCTATGCCCGTTCCGGAACCCCAACATAGCTGGTAGAACCACCAATATAATTGGCGCAAAAGTAAATTCCACCAACACCCGCAACAAGCTGGGTAACAGGTGGCCCTCACTCCCGGAAAAATCTTGAATGGGGGTCATTGGTAAACCAGCGGCATAAGTCTTAGCCTTGGGCGCTACTGATTTGGGCTGATTCATCGGGTGATAGTTTGCATTGGCACGACGAACCAAGAGGTGATCGAACAACACGTGAACCCAGGGAAAGGCCAAGTAGCTGATTACCAGATACCACGACTCTGCGTTCCAGGTGAAGACGAAGCGTCCCACCGTAAACTGACAATTCAATAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //