Array 1 3986941-3984350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011289.1 Salmonella enterica subsp. diarizonae strain 11-01853 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3986940 29 100.0 32 ............................. AGATGAACGCCAAAAAACATGACGAACAGCAG 3986879 29 100.0 32 ............................. GGCCATTGTGGGACGTATGAACCATCAACATA 3986818 29 100.0 32 ............................. GGGATCTGAGCAATACAGCGGGGAAATCAGCC 3986757 29 100.0 32 ............................. CAGCTATTTCCCAACATTGCCCGTGTTATTGG 3986696 29 100.0 32 ............................. CTTAACGGCGAGAGCGTGAAGGTGTATCGCTA 3986635 29 100.0 32 ............................. CCAGACAAACCCTGCTCGTTTCAGATGCTGCG 3986574 29 100.0 32 ............................. TGACTTTAACGCGAGCACCTTTGGTATTAGTT 3986513 29 100.0 32 ............................. GCAACTAATGTTAGTAAAAGTTAGCTAATAAG 3986452 29 100.0 32 ............................. ACAGCACGTTAAAGATGCTGGCGGTATCTGAA 3986391 29 100.0 32 ............................. TGGACGAGCTGATTGCTGCAGGACTTATTATT 3986330 29 100.0 32 ............................. ACTGTTAGGGTGACAACGCCGACCACAACGTC 3986269 29 100.0 32 ............................. GTACTGCTCTTCACCACAGTGCGGACACGGTA 3986208 29 100.0 32 ............................. ATTATGAAACTGCTGAAAAATTAGTTGTTGAC 3986147 29 100.0 32 ............................. GAATTGCAATCAGGCCTTTCTTCAGAACAAAT 3986086 29 100.0 32 ............................. TGTAATTTCATCTTCTCGCGGCGATCCAACTG 3986025 29 100.0 32 ............................. GCTGTTGATTATATTGGTAACTTTAACGATGG 3985964 29 100.0 32 ............................. TTACCAAAAAAGGAAATACCATACATGGATAA 3985903 29 100.0 32 ............................. CATAATTAGTCCCTCCAGATTCCTGGGCTTTT 3985842 29 100.0 32 ............................. AAAAATGAACAGGCATTATTAACATGGGATAA 3985781 29 100.0 32 ............................. GGTGTGTAACCACGTATAGGGTATAGCCCTGT 3985720 29 100.0 32 ............................. GCTTTCAGGGATTCTATAGTATTTATATATTT 3985659 29 100.0 32 ............................. ATATTAGTGGGCGCAATCAGTGTCACCGTCCC 3985598 29 100.0 32 ............................. GCTATTCAATAAATAAATCAATAACTGCATAT 3985537 29 100.0 32 ............................. TGCTGTATCTCGGTTGGTTCGATGGCAATCCG 3985476 29 100.0 32 ............................. TCCGTTAACCAGGGAAATGCCAGATGACAGCA 3985415 29 100.0 32 ............................. CCCTCAAATCAGACGCCGTTACCATCGCAGTT 3985354 29 96.6 32 ..........................A.. TACGCGTACAGGTCTGGCAAAATCAGCTTCAT 3985293 29 100.0 32 ............................. ACTGGTCCCGTGATCTTAACGCCAGGATTCAG 3985232 29 100.0 32 ............................. GCTACCGCCGATAACACGAAACGCATCGGCCC 3985171 29 100.0 32 ............................. CGCCCGGTTATCGCCAAAGAACGCCAGAATCA 3985110 29 100.0 32 ............................. TACATATCGAACTTGCCCATTACTAACACCTC 3985049 29 100.0 32 ............................. AATGGTTTTCCACCTGCAGCAGGAACGAGCTG 3984988 29 100.0 32 ............................. TTAGTTTGTGTTTTGTTGCTATGGGTTAACTA 3984927 29 100.0 32 ............................. CGTACAGCAACGGCGGGTAATGGCGAGCGAGG 3984866 29 100.0 32 ............................. CTGTTCCCGCTCGTTCAGGTCGGTAACCGGAC 3984805 29 100.0 32 ............................. TATGCACAGCAACCTTTTCTATCGGTGAACAC 3984744 29 100.0 32 ............................. CCGGAAAAACCACAGGCCAGCTTAATGCGATG 3984683 29 100.0 32 ............................. GGCTGATAATCCGGAAGATGTTGTTGTGGAAA 3984622 29 100.0 32 ............................. GAACATCAGACCTTATCACCTGGTGGCAATCG 3984561 29 100.0 32 ............................. CAGGAAAAAACCGGGGAAAACGGCAGCCGCGT 3984500 29 100.0 32 ............................. TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 3984439 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 3984378 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //