Array 1 429122-430308 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOY01000001.1 Salmonella enterica strain BCW_4894 NODE_1_length_611391_cov_0.390446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429122 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 429183 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 429244 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 429305 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 429366 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 429427 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 429488 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 429549 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 429610 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 429671 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 429732 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 429793 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 429854 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 429915 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 429976 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430037 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 430098 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 430159 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 430220 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 430281 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446479-447975 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYOY01000001.1 Salmonella enterica strain BCW_4894 NODE_1_length_611391_cov_0.390446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446479 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 446540 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 446601 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 446662 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 446723 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 446784 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 446845 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 446906 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 446967 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 447029 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 447091 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 447152 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 447213 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 447274 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 447335 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 447396 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 447457 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 447518 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 447580 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 447641 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 447702 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 447763 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 447824 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 447885 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 447946 29 93.1 0 A..............A............. | A [447972] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //