Array 1 38-1135 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTS01000019.1 Bifidobacterium longum subsp. longum strain MCC10127 contig0019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 38 33 97.0 33 ................................G ATGAGCACATTCGATACCGCCACGTCACGGATT 104 33 100.0 34 ................................. AGACGTGCGCACCGAGCGCGTTGCGCGCGGCGGG 171 33 97.0 34 ................................T CGAAAACGCGCCCCACGGCGGACGTGGTGGGGAA 238 33 100.0 35 ................................. ACTGCTGTGCGGTGCCCGAGTATCCGCCCTGCTTG 306 33 93.9 32 ...................T............C GTATCGAACCCGCCAACGGCGTGAATAATCTC 371 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 437 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 503 33 97.0 35 ................................T TGCCCTGTTCGCGCAGAACGGCACCATCGGCGCCG 571 33 97.0 33 ................................G CGTTATGGTACAACTCGGGAAACAACATACCGA 637 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 706 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 773 33 100.0 32 ................................. TCACTGGCATACCGGGAAAGATTCAAAGCGCG 838 33 97.0 33 ................................C GCGCAGCGGTGCCCCGCAAGGCGCTCGCCAAGC 904 33 100.0 34 ................................. CCCTGTTGGAGGATTACACGACCGGGTATGGCGC 971 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 1037 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 1103 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 98.1 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : AATGATGAGCACATTCGATACCGCCACGTCACGGATTG # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTAAGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATAATCGCAGCGGGGCGCAGATCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36744-38767 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTS01000021.1 Bifidobacterium longum subsp. longum strain MCC10127 contig0021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 36744 36 100.0 29 .................................... CGGTGGGGCAAAGCCATGGTCAACGGCCT 36809 36 100.0 28 .................................... TAATCACGGCAGGGGCATGGATCCCATC 36873 36 100.0 28 .................................... TCTTCATGCGCTCAAGGAAGTTTCTATC 36937 36 100.0 28 .................................... CGATCACGTCCTTCCTCACCGGAGGCAC 37001 36 100.0 28 .................................... AAGAGCCTCGAAGGGTTCAAAGATGATG 37065 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 37129 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 37193 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 37257 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 37321 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 37385 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 37449 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 37513 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 37577 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 37641 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 37705 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 37769 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 37833 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 37897 36 100.0 28 .................................... CGTAAACCTTGTTAAACAAGTTGTCAAA 37961 36 100.0 28 .................................... CTGTGGCTTCTTCACCTTCGGCACCTTC 38025 36 100.0 28 .................................... TTTTCTCCAGCACACGGACGTAATCGGC 38089 36 100.0 29 .................................... CCAAGTGTGGGCCGAACTCAACAACTAAG 38154 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 38219 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 38283 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 38347 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 38412 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 38476 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 38540 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 38604 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 38668 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 38732 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 32 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 838-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHTS01000040.1 Bifidobacterium longum subsp. longum strain MCC10127 contig0040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 837 33 100.0 35 ................................. TGTGAATTACGATATGGGCGACGGGTGGACGCCCG 769 33 97.0 34 ................................T GCGAGCTCAAATCCACGGACGGCAGGATCGACCT 702 33 97.0 35 ................................G CCTCCCTACCTGATGCCGAAGACCCCGACGCTGGA 634 33 100.0 34 ................................. TGCCTACGTTATGGTATTGCTTGGCTCCGGTAGT 567 33 100.0 33 ................................. ACGGTGATGCTGAAACTGTTGGTCAGGCATCCG 501 33 97.0 33 ................................T CACATCCTGCTACAACGCGGCCGAGGTGGACCT 435 33 100.0 35 ................................. TGAATGAGTGCGAACGGCTTTCGGGCGGCGTGCGC 367 33 100.0 32 ................................. CGTGAAACGTTTGGCGGTGCGGACGATTTGGA 302 33 97.0 32 ................................T CGGCAATCGTAAATATTGCGGCATGGAAACGA 237 33 97.0 34 ................................C AATGAGGCGGGCGGGGTGATGAAGCGTTGGACAA 170 33 100.0 33 ................................. TCATTGCTTTATAAGTGCTTATACGCGCCTATA 104 33 97.0 32 ................................G GGTCCGTCTCAACCATCTCGCTGGATAGTCTG 39 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= =================================== ================== 13 33 98.4 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : ACACCGCTCACAAAGCGGACGCCAACTTGCTAAAACACAAATTTCGTCTTGCGGGGCGTGATGGGCTTCAGATAGCCG # Right flank : GATGAGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //