Array 1 69935-68319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMP01000008.1 Salmonella enterica subsp. enterica serovar Newport str. CVM20775 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69934 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 69873 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 69812 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 69751 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 69690 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 69629 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 69568 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 69507 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 69446 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 69385 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 69324 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 69263 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 69202 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 69141 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 69080 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 69019 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 68958 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 68897 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 68836 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 68775 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 68714 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 68653 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 68592 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 68531 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 68470 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 68409 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 68348 29 100.0 0 ............................. | A [68321] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87790-86604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMP01000008.1 Salmonella enterica subsp. enterica serovar Newport str. CVM20775 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87789 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 87728 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 87667 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 87606 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 87545 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 87484 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 87423 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 87362 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 87301 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 87240 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 87179 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 87118 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 87057 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 86996 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 86935 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 86874 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 86813 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 86752 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 86691 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 86631 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //