Array 1 1061-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKY01000010.1 Clostridium sp. OM07-9AC OM07-9AC.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1060 32 100.0 33 ................................ CTCCAGAAATAATCAATAAACTAGCAATGACGT 995 32 100.0 34 ................................ TTGTATTCAGTGATCAGCTTGATGGATGTTCCCT 929 32 100.0 34 ................................ TTTTATACAAGCCCCATATCAGACGATCGACTTT 863 32 100.0 33 ................................ AGTCAAAGCTACCGTTTCAGACCCATCATTTGC 798 32 100.0 32 ................................ TTTAACACCGACTTTTATCATTACTTAACACG 734 32 100.0 34 ................................ CAGATTGAGTCTCTCATAGATTATTATTCGGGAA 668 32 100.0 34 ................................ AATGTGCGATTATTATATAGGCAAGTATTGTATA 602 32 100.0 33 ................................ TCATTATAGGTATCCGCACGCAAGCCATAACGA 537 32 100.0 37 ................................ TTTTGTACAAGCCCCATATCCAGACGATCGACTTTTT 468 32 100.0 34 ................................ ATCCCGCACCGGGTCTTACTGGGATAGCGAGGAT 402 32 100.0 33 ................................ CGATTATAATGTGTGGAGCAATGAGCTACTACA 337 32 100.0 34 ................................ TTAATGTCTAAAATACCTTTATTCATTTCGATTT 271 32 100.0 33 ................................ TCTCAAAAAAGGAAACAGGGGTTAGACACCCCT 206 32 100.0 33 ................................ GTCATTGGTCATATAGTAGTCTATTTGACTGTG 141 32 87.5 35 ...CGCT......................... AAAACGCAGTGTCGAACTTTGGTGCGAGAAAATGC 74 32 100.0 2 ................................ GC Deletion [41] 40 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 99.3 32 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : TTATCCAGTTTTTTTATGGAAATGAGGTGGTGAAAATGTTAGTTTTGGTTACTTATGATGTAAATACGGAAACAACTGCAGGAAGAAACCGATTGCGGAAAGTTGCAAAAGAATGTTGCAATTATGGAAGACGTGTTCAGAATTCAGTATTTGAATGTATTATTGACGCGGGGCAAGCGGTATTGCTTAAAGAAAAACTAAAGTCGATAATAGATGAGAAAATTGACAGCTTAAGATTTTATTATATGGGAGAACGTTATCAAACAAAAGTCGAATATATTGGAGTGGATAGAGGGGTTGCTATGGATCAAACATTGATTTTATAGTATGGTGCGGATGGGAAGGGGACATATAAACATCGAGAGATTCGCACCAGAAAAATTCAATAATTTTATTTAAAAGAGCTTTAAATACCGAATTTATATAAAATAAAAAATGTATTATTGTGAAAAATGATGTGATATCTTGTCAAAAGATATTTTTTTTTATACAATTATGCT # Right flank : TCATTAGGC # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKY01000013.1 Clostridium sp. OM07-9AC OM07-9AC.Scaf13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 34 32 96.9 39 ...T............................ ATCAAATAAAGAAAGGCGTGAGAGATAGGATTGCTAAAG 105 32 100.0 35 ................................ CGGCAAGCCTAACGTATAAAATTGCCGGGGTGGAT 172 32 100.0 34 ................................ ATAGCAAGCAGGCCATTACCATCCCCGTGATGGC 238 32 100.0 33 ................................ AGAAACACGGTCAAGGGCATATGCAGATGGTCT 303 32 100.0 34 ................................ CAGAAACTTGTTGGTGAATTACCAGCTCTTGTAA 369 32 100.0 35 ................................ AAAGATAATAAAATGTTTTTGAATCTCGTCGTAAC 436 32 93.8 0 ...................G.......A.... | ========== ====== ====== ====== ================================ ======================================= ================== 7 32 98.7 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : TATATTGATACTGTTGATAATGACGATGATTCCG # Right flank : TGGACAAGAAAAGTATAAGGAATGTGTTATATTTTCTTGTTTCTATAAAATAGATTATTAAAAAAATAAGTTATATTTGAAATTATGAGTCCGTTTTATTGTACAATGAACATGTTATAGTATAATATATGTATTTATGATAAATTCTATTCAAAGGCAGGTGTTTCCCATGGCAAAATCCCCCAATCAAAAATTGAAACTCCTATATCTTATGAAGATTTTTCAAGAAAAGACGGATGACAATCATGGTCTCCGGGCTGTGGATCTGATGGAAGAGCTTCGCCAGTACGGTATAGAGGTAGAGAGAAAAAGTCTGTATTCAGATATAGAAGCATTGCAGATATTTGGATTGGACATTAATAAAATTCAAAAAAACCGGACATTTTATTATTATATGGGACAGCGGGAGCTGGAGTTTGCTGAGTTAAAACTTTTGGTGGATGCGGTACAGTCGTCAAAGTTTATTACGGTCAAAAAGTCGCGCCAGTTAATAAAAAAGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1536-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKY01000071.1 Clostridium sp. OM07-9AC OM07-9AC.Scaf71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1535 32 100.0 33 ................................ CCCATCATCCTTGCTATCCTCTGCCGGTTTATC 1470 32 100.0 34 ................................ GTACGTTTCCTGCATATATGGCAAAGCATATTTG 1404 32 100.0 33 ................................ AAAAATCCGATCAAATTGTTTTCTTTCGGCTTC 1339 32 100.0 35 ................................ ATTGCTAGTGGTCTTAACAATGCCTATGTTTTAAC 1272 32 100.0 34 ................................ ACCCCCAAGTGGGTTAAGGATTGTGCAGAGGGAG 1206 32 100.0 34 ................................ AAAATGCCGTCTCTACTCTGGTGCGAGAAAACGC 1140 32 100.0 37 ................................ ACGTGTTGAGGAGATCTTTCTTCCGGAGCATTTGCAT 1071 32 100.0 33 ................................ AACAAACTTAATTTCACACATTAGAGTCACCTC 1006 32 100.0 33 ................................ CTATTGGTTCCGCCGTAGGCGTTTTTGAAAGAG 941 32 100.0 32 ................................ AAAAAATTAAAATCATTCACATTAAAACCTCC 877 32 100.0 34 ................................ TCCGGCAGTACGTCAAGGTCAATGCCACATTTTT 811 32 100.0 34 ................................ TGCAAAGGCATAAGATACGGATATACCCATCATA 745 32 100.0 34 ................................ TATGCTGTCCGCATACTCCTGCGGAATCGTGATC 679 32 100.0 34 ................................ AGCAGGGAACATCAATTAAGCTGATTACGGAATA 613 32 100.0 34 ................................ AATCTCATCCCTTTGAATATTGACATATTGTTTA 547 32 100.0 33 ................................ TGTTTTGAGTAAGCAAGCGCACAAGCTCATAGG 482 32 100.0 35 ................................ ATATGTCTCCATATGAAACCGACCGGCGAGCGTAA 415 32 100.0 33 ................................ ATAAGCCGAACCGCCATTACTGCTATAAACGAT 350 32 100.0 34 ................................ TTTCCGAACGAAAGACCAGAACGGAGATTATCCG 284 32 100.0 34 ................................ CAACGTCTCCATTTGACAAGTACCTTGTACCAAT 218 32 100.0 33 ................................ TTGTAGCTCAATTTGACAAAATGCTCGACCGTC 153 32 100.0 33 ................................ AATCCTGTCGTTTAACAAATGTGTCTTGTTGCT 88 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 100.0 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : GTGGATTGAAATGATAAACATATAACTGTCATTAAAAATGATAGA # Right flank : TAGCACAGTCCGGCGGAGTATTCCTTGGGGAATATGTCGCTCCCCCTTGTGGGAGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15-1362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUKY01000076.1 Clostridium sp. OM07-9AC OM07-9AC.Scaf76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 33 ................................ CCATTTAACGGGCAGACAAAAGCACATACCTTG 80 32 100.0 33 ................................ TTAAAATCGAGGAAAAAACGCAAACCGCAATCA 145 32 100.0 33 ................................ CTGTGTGTATTTATTATCTTTACTCATTTTACG 210 32 100.0 34 ................................ TATTCAGTGATCAACTTAATTACTGTACCTTGCT 276 32 100.0 35 ................................ AATGCGTGATTATTATATAGGCAAGTATTGCATAA 343 32 100.0 34 ................................ AATCTTGAGGCCGGGAAGAATTATGCCGAATTGG 409 32 100.0 34 ................................ CTCCGGGGCGGGAATGTTTAGTCTAAATTAGAGT 475 32 100.0 36 ................................ GCCCAAGGTATGTGCCTTTGCTTGACCATTAAATGG 543 32 93.8 33 ..............................TA TCGCTAGTGGTCTTAACAATGCCTATTGTTTAC 608 32 100.0 33 ................................ TACAATAAATGATTGGCAATAGTAGAATTATAT 673 32 100.0 34 ................................ TCAAAACAGAAGATACCACGAATTGATAGATGCC 739 32 100.0 32 ................................ ATATTGATACTGTTGATAATGACGATGATTCC 803 32 100.0 34 ................................ ATCAAATAAAGAAAGGAACGCCCCTCCGGGACGT 869 32 100.0 34 ................................ AGTAATATCGCTACCACTAAACTTGACGCCATCC 935 32 100.0 34 ................................ ACCGCATCCGCTTCTTTCAACACCGACTTTTATC 1001 32 100.0 33 ................................ CCGGATGAAACGGAGGTGTAATGCATGTATGAC 1066 32 100.0 34 ................................ CCCTATGGGAGTGATCAAAAATAACACTCCGTAT 1132 32 100.0 35 ................................ CACAATTTGGGCGGTATTACTACATATCACCCCAG 1199 32 100.0 35 ................................ AGCAGGGAACTGCCATCAAGCTGATAACTGAATAC 1266 32 100.0 33 ................................ GACGATATAAGCGAACGATTTGACGGTCAATAC 1331 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 21 32 99.7 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : GTGCGAGAAAATGCG # Right flank : TCTCGCTAAGTCCGGGGCTGATACGACTGCTACGTCGCTCCCCTTGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //