Array 1 4259903-4259202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019267.1 Escherichia coli strain 13C1079T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4259902 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 4259841 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 4259780 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 4259719 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 4259658 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 4259597 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 4259536 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 4259475 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 4259414 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 4259352 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 4259291 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 4259230 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAATCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4277263-4275404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019267.1 Escherichia coli strain 13C1079T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4277262 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 4277201 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 4277140 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 4277079 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4277018 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4276957 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4276896 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 4276835 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 4276774 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 4276713 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 4276652 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 4276591 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 4276530 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 4276469 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 4276408 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 4276347 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 4276286 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 4276225 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 4276164 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 4276103 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 4276042 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 4275981 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 4275920 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 4275859 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 4275798 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 4275737 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 4275676 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 4275615 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 4275554 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 4275493 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 4275432 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //