Array 1 784-390 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKS01000135.1 Saccharopolyspora terrae strain 16K309 NODE_137_length_2113_cov_68.8943, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 783 29 100.0 33 ............................. TCCCCGTGTTTCCTGATTTCCCAGGTGGGGCCC 721 29 100.0 32 ............................. CTGGCATCAAGGTCGTCAAAGTCCGCGTCTGG 660 29 96.6 32 ..............T.............. TTCCGGTCGTAGGCGAGGTGGCGCAGCTGACG 599 29 93.1 31 ............T...........A.... TGCAGGGGCTGGTAGGGAGCGGGAACTCGAT 539 29 93.1 32 ...T........T................ AAATTCATCGAGGGTCCGTGCGTCGCCTGGTC 478 29 93.1 31 ........T................C... CGCAGCGTGTTCTGGTTCGAAGCTTGGACCA 418 29 89.7 0 ...........A..T.........A.... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 95.1 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCTAGAACAGACGCGATAGCGCCCGGACTACCTTCACTTGCGTGGAGAAGACTCAGATGGGGTCCTGTACCCGGGCAGATATGGCGGACTACCTTCACGTGCGTGGAGAAGACACTTCGTGAACTGCGATTTTACAGCGACGGTTGCTCGTTTCGAGACACGAACGCGATCGATCGATGATCCGCTGCCGGGTGTTCAGGCATAGGGTTCATCATGCTGCTGTCCCTCGGTGTTGCAAACTTCGGAGGCGGGCCGACGATGGTGCCCCTCTCGAAACCTCGATTGGCTCGGATCCGTCGATGAAGGACGCACTTTAGGCCACGGTCGCATCGTCGCCGAGCCACCCAAAATTCTCGCCAAGCGGGATGCTATCGAGTGGCGATGCCGAACGCGGAAAGGGAATGGACTTCATGTCGTGCGGAACAAGGCGGAGGTCCATCGGGTTGCCGCGTCGGTGCGAAAACGTGCAAGCGCCGTTCTAAAAGACCACGTCAAGGAGT # Right flank : GGGGATCGGAAGAGCTTGGGCGCGCCCCGATGGCGTGCTCTCCACGCAGGTCTCTGTCCCGCCGTCGCAGCAGTGGAGGGCTGTGAGCCGTTCGGGTAGGTGGTTATGACTCGCCGAGCGCACACCCGGGACTGCGGGATAGGTCACACCGCGACGAGAGTGGGGCGGCGGTCATTCCCGCCGTCGTTGATCTTTGGGAGTAAAGATTTGGGAGGATTTTGGGAGGATGGATGTGCGTTAAACTGCACTCAACCGCATCTAGGGGGTCTGCCCAGGGTTTGGTTGACACCTGACGTGTGAGGCTTCGGCCTCACTTGGAAGGATGTCGTCGTGCCCAAGCCTTACCCGCAGGAGTTTCGTGATGACGTGGTCGCTGTGGCCCGTCGTGGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1171-1565 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMKS01000135.1 Saccharopolyspora terrae strain 16K309 NODE_137_length_2113_cov_68.8943, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1171 29 93.1 32 ..................A....A..... CCATATCTGCCCGGGTACAGGACCCCATCTGA 1232 29 89.7 32 ..............A...A....A..... GGCGCTATCGCGTCTGTTCTAGAGGCGGTCGA 1293 29 96.6 32 ........................T.... TCGTTCCACACCGCATCAGCACCCCCGTCGGG 1354 29 100.0 32 ............................. ACGTCGCAGTCGCGGATGTCGGACATCCCCGG 1415 29 96.6 32 ..T.......................... GTGTCCATGATCTCCCCGGTGGCGTCGGTGAC 1476 29 89.7 32 ........T................CA.. CCCGCTGGGTGACCGACCAGATCACCGGTACC 1537 29 89.7 0 .C................A.....C.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTCTTCTCCACGCACGTGGAGGTGGTCCG # Left flank : ACTTTGACGACCTTGATGCCAGCGGACCACCTCCACGTGCGTGGAGAGCACGGGCCCCACCTGGGAAATCAGGAAACACGGGGACGGACCACCTCCACGTGCGTGGAGAGCACACTCCTTGACGTGGTCTTTTAGAACGGCGCTTGCACGTTTTCGCACCGACGCGGCAACCCGATGGACCTCCGCCTTGTTCCGCACGACATGAAGTCCATTCCCTTTCCGCGTTCGGCATCGCCACTCGATAGCATCCCGCTTGGCGAGAATTTTGGGTGGCTCGGCGACGATGCGACCGTGGCCTAAAGTGCGTCCTTCATCGACGGATCCGAGCCAATCGAGGTTTCGAGAGGGGCACCATCGTCGGCCCGCCTCCGAAGTTTGCAACACCGAGGGACAGCAGCATGATGAACCCTATGCCTGAACACCCGGCAGCGGATCATCGATCGATCGCGTTCGTGTCTCGAAACGAGCAACCGTCGCTGTAAAATCGCAGTTCACGAAGT # Right flank : GCCTCCGTGTCGGCGGGCGTGTCTTGTGGTTCGCCTCGTCCTCTTCACGCAGGTGGCGTAAGCAACCAACCAGGTTGGCCGCGCAACTCTGCTCCAGCCTCCGCCGGGACGGCACTGGGATTAGGAGTTGCACTCGCTGTCGTGCCCCGAGCAACACCTCTGAGTGGCACACCCGTCACCGGTGCTTGATCAGCGTCCGCAGATGCTCTTCGGCGTGGTGGACCGCGGTGTTGATGTCCTGGGTCTGGCCTGCGGACATCGTTCGTTGGCCGAGGCCTGAGACCGTGAGTACGGCGGCGAGTTGGTGTCTTTGTTCAGTGGTGAGGTGGGCATAGAGCGTCTGGTTCCTCAGTGCTTCGCGGGCGGCGTAAGCGTCGGAGAGCGCGGCGGAGACGACCGTCTGTCGCAACTGCGTGAGGGCTCTAGGGGGTGTCCTTAAAGTGGGTGTGGGTGACCTGGTTTGATCTTGGTTGATGGTGCGTAGGCATGAGCTGACTGAT # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //