Array 1 2040-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQY010000266.1 Citrobacter braakii strain CF248 Contig_266_79.2047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2039 29 100.0 32 ............................. ACGAATCCTTGAGAGCTGGTATGGTCGCAATT 1978 29 100.0 32 ............................. ATTTTATAGGCACACCCGCCGATAAAATTGCA 1917 29 100.0 32 ............................. TTCTCGCGCAACGACAAAATGATGGAATTCTC 1856 29 100.0 32 ............................. CGCACATAGGAATTGCTGTGCCACATCGGCTG 1795 29 100.0 32 ............................. CGGTCCACGTGGCCGCTTTTCTTTTCAAAACG 1734 29 100.0 32 ............................. GGTCGTCACCAGCAGGATGTCGTTATCGGCGT 1673 29 100.0 32 ............................. CGGGAGTATATCTACCGTACCACAGGTAAAGA 1612 29 100.0 32 ............................. TTGATTGAAATGCTGAAAACTCGCCAATTCCG 1551 29 100.0 32 ............................. GGCTTTGAGTATCAACCTAACTGCCAGATCAA 1490 29 100.0 32 ............................. GTCAGCCAGCGTGGTGTCGATGTAGGCATAGC 1429 29 100.0 32 ............................. CATGCTGGTTACTGCCCAGGTCATCAGCGCCT 1368 29 100.0 32 ............................. AGCGGAAATTTAGCCTGATAACCATATGCAAA 1307 29 100.0 32 ............................. CACCGTTACCGGGTCGCCGATTTTCGGCGCGC 1246 29 100.0 32 ............................. TTTTTGCCGTTCGCCGGCTTCGCTTGCAACAC 1185 29 100.0 32 ............................. CCTTTAGCATCGCTGATCTTGCGAACACGCCG 1124 29 100.0 32 ............................. CATCTTGCGGGCTTCCCGTTCCGTTGGCGCGT 1063 29 100.0 32 ............................. GAGATCTCGACCATTGATATTTCCGTTATTGG 1002 29 100.0 32 ............................. CCACAATTTTAACCCCACGCAAAACGCCGTGA 941 29 100.0 32 ............................. GCCAAAATCACCGGGGAGAATGAGGCGCAACC 880 29 100.0 32 ............................. GGCTTTCTCCGCTGCCATTTCTCATGATTACA 819 29 100.0 32 ............................. CGCGGCTAACTCACGATCTATACGCTCACCCA 758 29 100.0 32 ............................. TAGATCGCATTACGATTAGCGAGCTACATAGA 697 29 100.0 32 ............................. GTCGTGCAGTACCAGCAACAGATGTTGATCAC 636 29 100.0 32 ............................. TCTAAATTTGAGTTTCACCCGGCGACGGGTGG 575 29 100.0 32 ............................. CAATGCCGCCTTCTTCCGTGCTCAGGCGGTGC 514 29 100.0 32 ............................. GTGGAGAGAGTGATAAGCGCCGTAGATATCGA 453 29 100.0 32 ............................. CGGGGACACCGGTGCGGGAGACAGTGAATCAG 392 29 100.0 32 ............................. TAGCCCTGCGTTACGTCAGCGCTACGAAACGT 331 29 100.0 32 ............................. AAGACGTTTAACTATTTACAGGACTGGATCCG 270 29 100.0 33 ............................. CTGATCACTATACCCTTGAATACCACGCTCAAG 208 29 100.0 32 ............................. GAATCTACCAGGTTAATGAGCATGGAGATGTC 147 29 100.0 32 ............................. ACTTCATCCGGATCCGCGATGAGTACCGGCGA 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTACTGGCTGCCGGGGAAATTGAAATCCCTAAACCTTTTGCAGATGCCCAACCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATATTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : GCAATCTATTCAGTTTGTGCGTCATACCATCATGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-2082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQY010000072.1 Citrobacter braakii strain CF248 Contig_72_122.291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. AGGCACGTCTTCGGCAATTTGGCTGATACCCA 102 29 100.0 32 ............................. GATTTGATAAGCCGCTGATTGACACATCAAAC 163 29 100.0 32 ............................. GCGCTGGGGGAATTCACCCGCTACGGCAAATC 224 29 100.0 32 ............................. CCCGCCAAGATAAACCTCAACGAGCAATTCTT 285 29 100.0 32 ............................. CGGGAACCCACTGGCGTACAACACCAGTTCAG 346 29 100.0 32 ............................. GTATCAACCACATAGATATGACCATCACGCGG 407 29 100.0 32 ............................. TACTGAATGACTATGCCGAAACGCTGGAGAAC 468 29 100.0 32 ............................. TTGGCGATCATTTTCGGTAACAGCGGGGCCGC 529 29 100.0 32 ............................. CTGTTGCGCTCTGAACTCCGTCAGATTCACAA 590 29 100.0 32 ............................. TGGCCGCAACCGGAACAGGCGGCGCAGGCGGA 651 29 100.0 32 ............................. CTGGCCCGATAATTCTCCGCACTGTCGGTGGC 712 29 100.0 32 ............................. ACCTGGCGCCGGGTTTAAATCTTCCAGTACGC 773 29 100.0 32 ............................. TACCAACGTGTGCTGGTGGCACGATCTCGTGA 834 29 100.0 32 ............................. TTGCTTTTGCCATTCTGTTATCGCCCCTTATG 895 29 100.0 32 ............................. TCATCAGCCTTTACAACTGGTACATGCCCGTG 956 29 96.6 32 ..........T.................. TGCAGAGGGCGCGGCGCGCGCGCACTTCTCGG 1017 29 100.0 32 ............................. GGTGAGGGTTCTCCAATCGAGTTGGGCCTTGT 1078 29 100.0 32 ............................. TAAACGGCTCGGGCAAAAAATATCAGCAGCAG 1139 29 100.0 32 ............................. GGGCGATAAAGCAAACTTCCGGGACCGTTAGT 1200 29 100.0 32 ............................. CTCTTAATAAACGCGTTTAGCGGATTAGTCTC 1261 29 100.0 32 ............................. TTGAGCGTGCAATTCTGGAGCATGCCGGGCTG 1322 29 100.0 32 ............................. ATGTAGATATGGCCGCAGGTGGTTATATGCAG 1383 29 100.0 32 ............................. AGAACGGCGGCGGGTACTGGCTGGGCCGGATT 1444 29 100.0 32 ............................. CGGTACTTATCTTAGCCCACCGAACGCCGTCA 1505 29 100.0 32 ............................. GAATGGCCAATAATTTTAAATTCAGCCAGCGC 1566 29 100.0 32 ............................. AATTCATTGTCAGTATGTTGCTGTTGATAGTA 1627 29 100.0 32 ............................. AACGCAAACACACCCTTGATGCCGCTGAATTT 1688 29 100.0 32 ............................. AGTTGATGCGGCAAATCGTTGCGGCCGAAATG 1749 29 100.0 32 ............................. ATCACCTCGACTGTTCAAAACTCGATAGTAAA 1810 29 100.0 32 ............................. GCGGTCTCTATGTCGATGCGGTGGACTGAATA 1871 29 100.0 32 ............................. CTGGAAGTCCCGCGTGATGTGATGGATGTTTT 1932 29 96.6 32 ............A................ CCGGAGGTTCTGATGGTGTCCGAAACCATGTC 1993 29 93.1 32 ..T................A......... GAACATCCTGAAGTACACATCAAAAACGAACC 2054 29 86.2 0 ............T............T.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGCGTGTTTATCTCCAGCATTTCCCCGGCAGTAAG # Right flank : ACTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACAGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //