Array 1 7950-5335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPTW01000003.1 Listeria monocytogenes strain G6054 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7949 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7883 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7817 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7751 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7685 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7619 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7553 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7487 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7421 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7355 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7289 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7223 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7157 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7090 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7024 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6958 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6892 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6826 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6760 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6694 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6628 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6562 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6496 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6430 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6364 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6298 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6232 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6166 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6100 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6034 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 5968 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5902 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5836 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5770 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5704 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5638 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5571 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5505 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5439 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5373 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5338,5341,5346] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49023-50351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPTW01000002.1 Listeria monocytogenes strain G6054 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49023 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49089 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49154 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49218 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49284 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49296] 49352 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49417 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49482 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49548 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49612 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 49677 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 49742 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 49807 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 49870 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 49933 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 49999 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50062 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50127 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50193 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50258 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50322 29 93.1 0 .......................A....C | C [50345] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //