Array 1 174656-175294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHJ010000190.1 Escherichia coli strain B-40 ESC_QB0123AA_AS_NODE_4_length_188340_cv_10.178133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174656 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 174717 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 174778 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 174839 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 174900 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 174961 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 175022 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 175083 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 175144 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 175205 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 175266 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2488-3735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHJ010000066.1 Escherichia coli strain B-40 ESC_QB0123AA_AS_NODE_15_length_99063_cv_9.361628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2488 29 96.6 32 ........A.................... CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 2549 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 2610 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 2671 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 2732 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 2793 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 2854 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 2915 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 2976 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 3037 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 3098 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 3159 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 3220 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 3281 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 3342 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 3403 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 3463 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 3524 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 3585 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 3646 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 3707 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //