Array 1 1028108-1029538 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024168.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1028108 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1028169 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1028230 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1028291 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1028352 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1028413 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1028474 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1028535 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1028596 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1028657 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1028718 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1028779 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1028840 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1028901 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1028962 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1029023 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1029084 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1029145 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1029206 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1029267 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1029328 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1029389 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1029450 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1029511 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1046162-1050035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024168.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN070643 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1046162 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1046223 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1046284 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1046345 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1046406 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1046467 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1046528 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1046589 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1046650 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1046711 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1046772 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1046833 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1046894 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1046955 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1047016 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1047077 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1047138 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1047199 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1047260 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1047321 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1047382 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1047443 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1047504 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 1047565 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1047626 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 1047687 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 1047748 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1047809 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 1047870 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 1047931 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 1047992 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 1048053 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 1048114 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 1048175 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1048236 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 1048297 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1048358 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1048419 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1048480 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1048541 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1048602 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1048663 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1048724 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1048785 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1048846 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1048907 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1048968 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1049029 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1049090 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1049151 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1049212 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1049273 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1049334 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1049395 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1049456 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1049517 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 1049578 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 1049639 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 1049700 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 1049761 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 1049822 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 1049883 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1049945 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1050006 29 96.6 0 ............T................ | A [1050033] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //