Array 1 773-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSX01000212.1 Rothia mucilaginosa strain 788_RMUC 418_11150_195992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 772 29 96.6 32 ........A.................... TGATTGGGGAGGCTCAGATTAGGCGGATTGAT 711 29 100.0 32 ............................. CTCACCGCAGGCGATGGCTACCGGTACTACAC 650 29 96.6 32 A............................ GTGGTGATGCCGAAATTCTCGCCGGCGATGAC 589 29 93.1 32 ...C........................C TGGCTCCAGAAGCCGCGGCGGGTACCTGCTTG 528 29 100.0 32 ............................. AGCGCGGCTTGGCTGACTGAGAATGGGGTGCC 467 29 86.2 32 ........A..A.AG.............. CCCGGGTAGTCTTCCTTCTGACTGCTGAGTGC 406 29 96.6 32 ............................T CAATATTTTCATGCGATAACAGGATCTGGAAA 345 29 100.0 32 ............................. AAAGGTAGCCTGAATCCATGACCCCAATTTTC 284 29 96.6 32 ............................T GAGGAAGGTGCTAAGTGCCATGATGATATGTC 223 29 100.0 32 ............................. AGAGGGCACAGGGATCTCATGCATTCCAGGCA 162 29 100.0 32 ............................. TTCATGAGTGGTTTTTCATGGATGATGGCTGA 101 29 100.0 32 ............................. AATCTCTTCCGGCGGCTCCTCAGCGGACTGCT 40 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.1 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : TGGCAGGCTCGCCCTGGTGAGAGCGCTCATTATGGTCGTCTGCTGGCGAAGCTGGAGAACGGGCAGGAGTGGGCTTTCCGTCTTGCCGCAAACCCGGTGAAGCGTCACACGAATAAGCAGACGGGTAAGCGTGAAGTGTACCCGCACGTGACTGTTGCGCAGCAGCAGGCGTGGATTCGTGAGCGCGCTCCGCAGTGGGGATTTGAAGTAATTCCCGCGGTTGAAGGTCAGGATATTGAGGAGTGCCCGATGGTTTCTTCTCGTCAGGACCTTGCGTTTGCCCGCCGTAACGCTGAGGGCAAGGTCGGTAAGGTAACTCACCGTAAGGCTCAGTTTGACGGCGTTCTTCGCATCACGGATGTTGAGCTGTTCCGTCAGTCTTTGCTCTCCGGTATGGGCAGGGGTAAGGCGTACGGCATGGGCCTTCTGACGTTGGTGCCTCTGTCCCGATGAATGCTGTGGAGCAGAGGGGGAGTTAATCTGCGGACAATATTTTGCTT # Right flank : TCAGTCCTGCAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9971-10304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSX01000094.1 Rothia mucilaginosa strain 788_RMUC 185_10314_156371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9971 29 89.7 32 ..A.....T......A............. ATTGCGCAACGCTTGGGACTGACCCGCGCCGA 10032 29 89.7 32 ..A.....T......A............. ACTCTCAAGCAGAGCCAGGTCAGCAGACCGCA 10093 29 93.1 32 ..............T.............T GTAGGTTATGTAGCCTTAATTGATACCGTCGA 10154 29 100.0 32 ............................. GAAGCTCTGACACCTAACTCAAGCAACGGTCA 10215 29 100.0 32 ............................. TCCATCCTCAAGACTCAGGACGGCGAGCGTCT 10276 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTTTTCCCCGTATGCGCGGGGATGAGCCC # Left flank : GAAGGCTGGGCTCAACCGGTCTATTCTGGATGCCGCTTTTAGTACGCTGCGTCGTCAGCTGGAATACAAGGCCAGCTGGTACGGCTCACAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCGGCCTGTGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATTCGTGCGGAGGCTGTGCGGATGTATGAGGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTCGCAGGCTCTGATGCTGCCGGTTTGGTGGTGTTGGGGGATGTGGCGTTGGATGCGTCAAGGCCAGCCGCCACTGGCGGCGGGTCACCGTAGGCGAGTAATCGTCTACTCATCCCCCTTTTATATACGTGTGGAAACTGAATATTTTTAGGCTTTTCTCGGGTATCGTGACTTGTGGCTAAGT # Right flank : TAAAGGTAAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGTATGCGCGGGGATGAGCCC # Alternate repeat : GTATTCCCTGTATGCACGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2337-1207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUSX01000209.1 Rothia mucilaginosa strain 788_RMUC 412_2348_29779, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 2336 29 100.0 32 ............................. CAGCGATGATGGTCAGGCGCGAGACTCGGCCA 2275 29 100.0 32 ............................. GGAGGTACCGCCCCCATTAAGCCTATGCTCGT 2214 29 100.0 32 ............................. CACTCAAAATTTCATTTTGGGAGGCATGAAAA 2153 29 100.0 32 ............................. GGTATCCCGACCGACCCGGAACCCTACATGGC 2092 29 100.0 32 ............................. GAATCGAATACGCTGCCGCTCTTCAGCAGCAC 2031 29 100.0 32 ............................. ACCATTGCCGACGGGGAGGTGATAGCCCCGGA 1970 29 100.0 32 ............................. GAGCACGAGGACTGAGCCAATCAGAGCAATCA 1909 29 100.0 32 ............................. TAGTTGCGGCTTCGACACAGATCGAGCAGCTG 1848 29 100.0 32 ............................. ATGACGGCACCAATGAGGGTGAGGCTCGGGTT 1787 29 100.0 32 ............................. AATGTGCATTCACTGTGACCCCTGGAGTGTAT 1726 29 100.0 32 ............................. AGCGTTACGGTGCAGAGGTGCCGCTGGACTTC 1665 29 96.6 32 ..........................T.. CGATCACGCATCTGCTTAGCCTGCTTGTGGTA 1604 29 96.6 32 ............................C TCCTCACGAGCAGTACGTGCCCGAGCATCAAC 1543 29 93.1 35 ...C........................T CGATGGGGGGGGCGGCTCCCCTCTGAGCCTGGAGC 1479 29 93.1 32 A...........T................ AGTGGCTGCAGAGGGTCAAGGGAGCCTGATTT 1418 29 100.0 32 ............................. AGCACCCAACATACCCAAAGTCGGGTTAGCCG 1357 29 100.0 32 ............................. ATGGTTCCCTGGCCTGACCACGTTCAGTTGCT 1296 29 96.6 32 ............................C TGCCACTGCATCGTCAGCTTGAGCGCGTTCAG 1235 29 72.4 0 ...........ATC..........TTTTA | ========== ====== ====== ====== ============================= =================================== ================== 19 29 97.3 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CGCTGAATACT # Right flank : GAAAGCCTTGTTTACCAGCCCTCCCAAAATAGAGAGGGCTGGTAAGCAGCGCACCCAAAAATATCAGCCTAGTTGCACACAAACCACACCCCAGCCGCTGAGCAACGCCTCCCTCTCCTCACCCTCCCACCCCATACCAACTTCCGGCAAACTTTGCCAGATATCGCCCCTACTTCGTTGAACACCGAGAATGGGCGTAAAATCACCGCCGGTTCATCTTCGCTTTAAGGAGACCTTAAGGTACGCTAGATGACTGGGTCAGGGAACTCGCGCCGGTCTCACTCACCGCACATCCGTCCGACAGACACCCGCACCCCGGTCGCTGCGTCTCACTCACGCATACAGGGGAGGGAACCCAACGTATCGGCCTCACTCACCGTTTACGCCGCTGTCCGCGCGTCCTGCCCCCCGTAACTCACTCAACTCAAACAAGAACTGAATAGGACAATCATGCCCTTGCTTACCCATCGACTCTCACGACGATTTTTCGTAAAGGGTGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //