Array 1 169-2003 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOGQ01000033.1 Cryobacterium sp. TMT1-23-1 C1053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169 29 96.6 32 ............................T GGGGAGATCGACCTGTTCTCAACGCATTCGGA 230 29 96.6 32 T............................ GTTATACGGCGATAACTACAGGGGCCTCCCAG 291 29 86.2 32 .TC.........C.G.............. TACACGATCTGGAACGAAGGGCGGCTGACGCT 352 29 79.3 32 ..C.......A.C.A.........G...T GGGTGGCACCCGCATTTTCACCCGATGATCTT 413 29 82.8 32 .TC.........C.G.............T GGCTGACACGTTCACTTGCACGCGTTCGTGGC 474 29 93.1 32 .TC.......................... GACTCATAATCCGTACACTCAAACCCTGTATC 535 29 93.1 32 T..........C................. CACGCCGGCTACGCGTACACACCGCAGCGACT 596 29 100.0 32 ............................. TACGACCTCGCCGTCGGGACCGACTTCATGCT 657 29 100.0 32 ............................. GGCGGCATGTACCAGCCGGCCGGTGTGGTTCA 718 29 100.0 32 ............................. GCGAACACGCACGGTTACATTTGGCCGGTGTC 779 29 89.7 32 ..C.........C.G.............. TCCGACACGTTGTTCCTGGGCGAAATCCGGAA 840 29 86.2 32 ..C.........G.G.T............ ACGGCAACGAGCGGCGACGTTCTGCGGACGGA 901 29 86.2 32 A.C...........G.............T TGGCCCACCGAGATTGAAACGCGGCTGTTCAA 962 29 86.2 32 A.C.............T...........T AAAACCGCCGTTACCCTTGGATTCCTGGTTCT 1023 29 96.6 32 .T........................... ATCAATGCGAAGTCGGGTGTGGAAGGAAAAAT 1084 29 82.8 32 .TC........C.CG.............. GTTCTTATGGATGAGATGACCGGCATCATCGA 1145 29 79.3 32 .TC........CA.C.T............ AAGATGCGATGACCATCTTTGGCCTTTTTGAT 1206 29 86.2 31 .TC.........C.G.............. AAGCGCGAGTGCGATGTGTGCGTGGAGATGG 1266 29 82.8 32 AAC...........G............G. GCCGCAGACACCAACTCGATGGTTCGCCAGCT 1327 29 86.2 32 ..C.........C.A.T............ CAGTCGCCCTTGTTCACCTTCCAGTACAACTC 1388 29 89.7 32 A.C.............T............ CGTCAGGCGTATTACGACATTACGATTGACGA 1449 26 65.5 25 GACC........C.---......AG.... ACCGGCGACTTGCCAAGTCGAACAA Deletion [1500] 1501 29 86.2 32 .....T...C...CG.............. GACGACACACAACCCGGCATCTCGAACGTTGC GGGCC [1505] 1567 29 89.7 33 A.C...........G.............. GGGTCTGATCCGCCTGGTGTTGTGCTGCCCATA 1629 28 79.3 10 T...-.........G........AC..T. GCATTCGGAC Deletion [1667] 1667 29 69.0 32 GT....T.G.A..TG..C.A......... ATCGTGCAGGCATACACCGGCCGCAATATGCA ACT [1679] 1731 29 93.1 31 ..............G.............T TACTCGGCCGACGCGATCGTGGCGGAGAAGC 1791 29 100.0 33 ............................. AGCGAAGAGTCCTGGACGCTTGAAGGGATGCTG 1853 29 93.1 32 A.C.......................... ACGACAACGAACTGCTCGAAGCAATATGGGCA 1914 29 89.7 32 A.C...........G.............. GACATCTGCGACGGCGGCAGGACGTTCATGGT 1975 29 69.0 0 TTC.........C.CA..C...G.....G | ========== ====== ====== ====== ============================= ================================= ================== 31 29 87.6 31 CCGTTCCCCGCGTATGCGGGGGTGTTCCC # Left flank : ACACCCCCCGGATCATGAGCGACTGGGGGCAAGAACCATGCCGGGCCTGACAGGCCAACACCCTCACATAACTACACGATCAAGGGCTACGAAGAAAGTAACGGGGGTGCCCAGCTTCACGAAGTCGTTCGTTCCCAGGTAGATCAGCGTCGGCCCGGCCGCGGTGCGC # Right flank : GCCGGCGAAGGAGCATTCCCACTCAGCCGCCTCTGAAGGATCGCCCGTCCCGTGAATAGCGTCGGTAACTTCACGCCCTCCGCCGCCACATCTGAATGACGTTGTCCGCGGCCTCCGCCTCGACCACAACCCGTTCCCGCTCCGCGGCTTGACGTGCCCGTACCTTCCCTGCCACGTCCAGCAGATCCCACATCTGCTCGCCAGTCACTGACACCCCGCGGGCACCGGTGCGCCGGGTCCGGCGGCGGATCAGGGCGTAGTGGGTGCGGAACACGGGCGCCCCGATCGCAGCCTGCGCGTCGTGGAAGAACACCACGTTGGACACGGGCCCGCTGCCGTCGTCGAGGGAGAGGAAGACGACGCGTTTGCCGCTTCGCATCGGGGGAGTGTGGGTGGCGCGGCGGACCCCGGCGACGAGCACTTCGGTGCCCCCGGGCAGGTTGACGAGTTCCGAGGCGGGTGTGACTCCGAGTTCTTTGAAGAGTGGGTAGAACCGGGTC # Questionable array : NO Score: 4.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGTATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [12-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5716-6272 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOGQ01000033.1 Cryobacterium sp. TMT1-23-1 C1053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 5716 29 96.6 32 ...........A................. CAGAAAGGCAACACGGTTACCTGGTGGGTTCC 5777 29 96.6 33 ..................A.......... AGTGTTGCCGGATCGCTGCTGGACGTCATGGAT 5839 29 100.0 32 ............................. GACGCGACGAAGATGGAGCAGGCCAGCCGTAA 5900 28 93.1 32 ....-.....T.................. CTCGATGACCTCGGGCAAGACTGGCTGGCATC 5960 28 93.1 32 ..............C..-........... GTCAATCAGGTCGCGCAGAACGACGCCGCGCA 6020 29 100.0 32 ............................. GTCATCACGACCAACGTGCATTATGCGGTCAA 6081 29 93.1 32 G......T..................... CTGGAAGTCATCGACGTCCTCTTCATCTAACG 6142 29 93.1 73 G...........................G ACGTACTGCACCGAACCCGTGTCATTCCTCGGCCGTTCCCCGCGTGTACGGGGCCACCGAAAAGTGCGCCCTC 6244 29 79.3 0 ..........T...AA...C.C....T.. | ========== ====== ====== ====== ============================= ========================================================================= ================== 9 29 93.9 37 CCGTTCCCCGCGTATGCGGGGGTGTTCCC # Left flank : ACTCCCGCACATGCTTCACCGCCCCGTACAGTCCATCCCGGTCGGTGAGTGCGAGGAAGTCAGCGCCGGCGGCGGCTGCCTGGTCGACGAGGGCCTCGGGCATGGTCACGCCGTAGTGCGGCGAGTACGCGGAGGCGACGTGGAGGTGCGGAAAGCTCTGTCCCAATACGTACCTCCAACCCCTGCTATCGAACATTTATTCGATATGGGGAGTGTAGGTCTGGGCTCTGACACTGACAAGGTCTAGACGGTGCGCGGGACTTCACTCGGCGTGAGTTTGTCCTGCGCGTGAACAAAGGGTCTCAGAAAAGAGCAGCCTTTCACATAGTCGGCGGACCGCCCAGCTTCATTTCGTTTCCCCGAGGAGGAGGCTGCCGTCGGATGTCGTCAGCCGCCAGGCGTCCGAGGTTCCGGTGAATGTTTCCGAGTTCCCAAAACTGAAGCCAAGATTGAAATTACCCTGCAAGATTAATCCTCCTGCGGCAGTCCTGCTCGACCTC # Right flank : CGAGCGGGCGGGTTGAATGACCAGATCACTACCCTCTTGACCCTGACCAAAATAGACCCAACAGTGCCCGGCGAGGTCTTGGGCGTATCCCAGCGGTCGGCGTCAAACCAACGAAACTGTTCGGTCAATATGTCAGTGCGAGGTACACCCCAACAGGACGTCAGGAACATAGTTCGAGGTATGGATATCTGCGAGCTCTCGAGTAGCATTCTGGAACGTGACGTTCGGGATCTGATGGGTTCCTGAAACAATATCCGAGCACGGATTACACCTTCCCCGTGGAAGCGGGGGTGTTCCCATCCGCACGCAGATCTTCGACACCATGAAGGGCTTTTCCCCGCGTATGTGGGGGTGTTCCGGACGCTCAGCCCACCGCCAACCGCGGAATGGAGTGTTCCCCGCGTATGCGGGGGTGTTCCCGGCGGCCACGAAATCCGTATTGCCGCTGCCGACGTGTTCCCCGCATATGCGGCGGTGTTCCCGAAGTCTTGCCGCGCACC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGTATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //