Array 1 5859-6437 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDP01000018.1 Streptomyces sp. XY413 P411contig113.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5859 29 100.0 32 ............................. AGCCCCGCCCCGTCCGTGGCCCGCTGTACGTC 5920 29 100.0 33 ............................. GACACGTCCTCGTTGTCGACCAGCCGGTAGCGC 5982 29 100.0 32 ............................. TCGGCCTGCGTGACCGGCCGCGTCCACGACGG 6043 29 100.0 32 ............................. GCGTTGTCCGCGCTGCCGGGCCCCCATCCTCC 6104 29 100.0 32 ............................. TACATCGGGAAGTCCGTGGTCTGGCTCCTGCA 6165 29 96.6 32 .....T....................... CAGCAGCCGTAGCCCGAGTGCGCCATCGCGAT 6226 29 100.0 32 ............................. CACACGGATCCGTGGAGCAACTCCCAGGTGGA 6287 29 100.0 32 ............................. ACCACCCACAGGGCGTCCAGGGCGGCCACGGT 6348 29 100.0 32 ............................. GCCGTATCGACGACCGGCTCCGCGCCCTCGCC 6409 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 CTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : CCGGCCAGCACATCGACCTGGCAGGCAAAAGCCGGCGTGGCCTTACCAATGTCGTGCACGGCAGCGAGCCAGACAGCCAGCGCCCTGGCGTCCTCGTTGCCGCCCGGTAGCTCACCAGTCACAAGTCCGCTCACTTGACGGGGAATCCACTCATCCCACAACCGACCCGCGACGGCTGCAGCATCGGCCATATGGCGCCACAGCGGAAGCCACTTGTCCGTCTTCCGATCATGCTTGGCCCACACACTGCGCGCCTCAGCTGTGAGCATCACACTCCAGCGCTCCGGCATGCTGCTCTGCATCGTTCCCTCCCCGGAAGCCGGCGTACGTCGCGCTCGCATGCGACACCCATGCGCCAGAGGTTGCTGCTTATAGTCGAATTGCCCGAGATGCTAGTCGGATTTGTCCTGACGCAGGAAGACCTTCCATCCGATTTGTCGGATCTCTAAGAAGTGCTGCAGCGCCGCCCCCGGCCGCCTTAAACTGCCAGGTCAAACAGT # Right flank : CATCGTCGCCCGCATCAGTTCGGTTCGTCCTCTCCGAGATGTCAGGCTTCGGCGGCGAACGCCCGTGGAGCCAGGTTTCCACCGCTCTGGAGGCACTCCTCGATCATCAGGATGCCGGCGGCGACGACCTTTCCCCTGCCGAGTGCGCGTCGATTCTGGTCCGGCTGGAAGCGATCACCGACCAGTGGGCACAGGAGGGCGGCGACCAGCTCTTCCAGCACATCGAGGACGTCCCGCTGGGCTTCCTCTGAAGCGCGCCCCCGGAACCCGCTTACGGGACAACCCTTAGCGGTAGCTTCTCAGAGGGCGTCCACGTCCCCGGCACGTGGGGAGCCCGGACCTGCCGCTGCACGCCTGCGCGGGGGGGCTGCACCTACGACCAGGCAACCACGCTCGTGTGCACGCAGGGTTCGCGGTCGACGCCGTGACCGGGACAGCTGTTGTGGTCACTAAGGGACGGCGACGAGGGGCACACTCCTCCGACCGTGACGGCAATCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3829-5078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGDP01000204.1 Streptomyces sp. XY413 P411contig54.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3829 29 100.0 32 ............................. CGCGAGCTGCTCGTGTGCTGCGTCGCCGAGGA 3890 29 100.0 32 ............................. GAGGAGGCGTAGCCCTCGACCTCGTACCACTC 3951 29 100.0 32 ............................. TCGTACCGGCTGATGCGTGCATCACCACTGCT 4012 29 100.0 32 ............................. AGGAGCTAACCCTGATGGCTACGCAGAACCCT 4073 29 100.0 33 ............................. CAGGTTCGGGTCGATGGCGTCAGCCGGCTCGGA 4135 29 100.0 33 ............................. CAGGTTCGGGTCGATGGCGTCAGCCGGCTCGGA 4197 29 100.0 32 ............................. TCCGCCGAGGCGGTGTCGTGGCTCTCCACCAG 4258 29 100.0 32 ............................. TCATCCGAGAAATTGAAGCCTCGGAGCAGCGT 4319 29 100.0 32 ............................. GTGAGCAGATTGCGGCGTGCAAGAGTACGTCG 4380 29 100.0 32 ............................. GTGGACCGCACCGAAGCCCGAATCACAGCCGA 4441 29 96.6 31 ............................G CGGTCATCTCGGCCTCGTGCTGGACGGTCAT 4501 29 100.0 32 ............................. TCGGCCAGCCAGCCGCGGAGCCGGGCCAGGTT 4562 29 100.0 32 ............................. CGCGACCGCCTGTCGCACACCTCTGGCACTAC 4623 29 100.0 32 ............................. GAGAAGCAATTCTCGTGATCATCAGTGCTGCC 4684 29 100.0 32 ............................. TCGCTGTGGCTGATCGTCCACCGGACCGGCTT 4745 29 100.0 32 ............................. GACTTCCCCGCCGCGGCGCCGGCCGGAAAGCG 4806 29 100.0 32 ............................. ACTGCCTTGCCGTCGCCCTGCTGGGCCTGCCC 4867 29 100.0 32 ............................. ACCTCGAGGCTCTGGACATCTGGGACCACGTG 4928 29 96.6 32 ...........................T. GACCGGCACACCGAGCTCTACAGGGAGCGTGT 4989 29 100.0 32 ............................. TCCCTTGGTGACCCCGTCCGGGGGCCGGGGTG 5050 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGTTCCC # Left flank : CCGGGTCACCCTTCAGTCGGACCGTGACGTCTCCGTGCCGGCAGGCCACAACTACGCAGACGAGGTGACCTGGTGACCGTGATCGTCCTGGCCCAGTGTCCCGTCGGACTGCGAGGGTTCCTCACCCGTTGGCTATTGGAAATCTCACCCGGCGTCTTCATCGGCGGGCCCTCGGCACGAATCCGCGAAGCGCTCTGGGCAGAGGTGCGCCAGTACGCGGGAAACGGCCGGGCGCTGCTGGCCTACAACACAGACAACGAACAGGGCTTCACCTTCGACACATACGACCACAAGTGGGATCCCACCGATCGCGAAGGCGTCATACTCATCCACCGCCCCAACGACCGGGCATCCGCTACCTCCGCCACCAACCGAGGCTGGAGCAAGGCTGCGAAGCGACGACGATTCGGGAACGCATGAGCCAGAAATCCTAAATGCCTGATTCAAAGGAAGTCGGTCAAATCTTCCGCTCCCACAGATAGAACCCCAGGTCGGTCACT # Right flank : CTTCCAATTGCCGCCGCCGGGGTGTCCGGTGACCTGCTTCCCGCACCCGCGGGCTCTGGCAAGAGTTTCGTAGCCGGAGATCATTTCGGTGACACGGTCGGGACGGTCTCCAGCGGGCACTGTCAGCCGAAGGTGCCATCGTCACGGACGGGGAAGTGTTCGCAACCATCGTGCTCAAAACGCACGCGCCCATCGAACCGGGAGTCGGTGTGGGTGCAGGCCCCCCAGTCCAGGCCCAGGTCTCCGCTCAGCGGGATCCAGAACCGGCATCCGCCGCACTGCTCGTCGAACCATTCGTCCCGGTAGTCGGGGTTTCCCGTGGAGCGATTGAGAAGCCGCAGCCAGCGCCCGTGGACGGCGTTGCCATCTCCCCTCCGTTGCCGTCCGTCTGCGGCCTACCCGATGCCACCCGTTCCCCAACCTCTCGTCGAATTCGCAAGGTCAATCTGCACGGAACCGGCGGTCAGCCGCCAGCTGATTTGTGCGAGCTTCAGCTCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //