Array 1 142431-143493 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYQ01000002.1 Ligilactobacillus ruminis strain PEL66 NODE_2_length_157896_cov_225.329_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 142431 36 86.1 35 A.....C.T.TT........................ AACGGTGAAACTAAGAACAATGGTTATACGGCGAA G,A,A [142433,142435,142438] 142505 36 100.0 37 .................................... AGATATGAACTTACCAACACTTAAATATTTCAATAAA 142578 36 100.0 37 .................................... TTATGAAGATAGGATTTATTCAATGGAAGAGCTTAAC 142651 36 100.0 34 .................................... ACAAGGAAAACACGGAAGATTTTAACAACGATAT 142721 36 100.0 40 .................................... AAATTAAAACAACAGAAAATGGCTTGGAAATTCAAGCTAG 142797 36 100.0 36 .................................... CGAACGAAACAGGCAAAAGATTGAAAAAGCACTTAA 142869 36 100.0 39 .................................... ATGAAAGTGAGTTTTATTATGAATCGTATTATTGAGTTT 142944 36 100.0 36 .................................... CATTTCACCTTTTGAATTTATGTTGGAAGAAGATGT 143016 36 100.0 34 .................................... CAAGCTATAAATGCAACAACTTTTTAAATTATTT 143086 36 100.0 36 .................................... TTTAATTAAGGCTGCAAATAATAGGGACAAAAAAGG 143158 36 100.0 38 .................................... TCATAGCATAATGCAAAGAGTTGTGCAAGTTCCTTGTG 143232 36 100.0 41 .................................... ATACCAGATTATAATAAATATGTCACCGGAATAAGTGACAA 143309 36 100.0 40 .................................... TTTGTAGCAGAAGAAGAGTTGTATTTTGATGATGAACTTG 143385 36 100.0 37 .................................... GTGCAAGTGTTTTGTGAGATAAACTTTCGTAATTATC 143458 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 99.1 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 127568-129977 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRYQ01000003.1 Ligilactobacillus ruminis strain PEL66 NODE_3_length_131615_cov_235.573_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 127568 30 100.0 38 .............................. GTATCTGACGGGAACTTTTTTGTTTAAAATCTATTGAC 127636 30 100.0 36 .............................. ACTGGCTAATACGAGAGCCAATGCAAAAATGAATAT 127702 30 100.0 36 .............................. TTTACCTTTTGAGTAAACCGCTCTGAAATGGGTGCT 127768 30 100.0 35 .............................. CTTCTTTTTTATGCTATAATTACAAATGTAAAAAT 127833 30 100.0 37 .............................. GTGCTTCCGCGGGTGCAGCCATCAGCAGCAGACCCGC 127900 30 100.0 35 .............................. TGGTATTATCGTGGGAGCGGAGTAAACATTGATTA 127965 30 100.0 38 .............................. CTTTTTAATCGTGTTTAGACAGTCGGCTTCACAACTTG 128033 30 100.0 35 .............................. AATACCACGTTTGAGGAGTGGTTGTATTGGTTCCA 128098 30 100.0 35 .............................. ACTGAAAGAACTGCTGAATGATCTTCCTGACCTAG 128163 30 100.0 35 .............................. GTTACTAACTCTCTTGTTTTCAACGGGCAAACGAT 128228 30 100.0 36 .............................. CACGGTTTGCAATAGCAAACTGAAAATAAAGAGAAA 128294 30 100.0 35 .............................. TACAGAATTCAGGTAAGTATTCGGTGGAGAAACCA 128359 30 100.0 35 .............................. TCAATAGTGACAATCGGGCGTGAAATCGTATTTCC 128424 30 100.0 37 .............................. TTAACTAACTCAAAGTTTTTGCGCATTATATCCACCT 128491 30 100.0 35 .............................. ACCATTGATGAACTTAACCAGTTTCAGAAAACATG 128556 30 100.0 35 .............................. GATGACACGATTAAAGAAGCTCAAAAAGAGTTTAT 128621 30 100.0 38 .............................. TTATAATATCCATAATCATATTGATTAAGAGTTTCATA 128689 30 100.0 37 .............................. AAAGACAGCTCTTATGTTTGTACAGTCGCTTAACTCC 128756 30 100.0 36 .............................. CGCCGCCGGCAACGGCAACTATTGCGACTGGTCAAC 128822 30 100.0 35 .............................. TGCTAAAAAATATCCTTTGTGGTTAGCAGCATATC 128887 30 100.0 35 .............................. GTTGCCGTCAACGCTGGTATTCCCATATCCTAACG 128952 30 100.0 35 .............................. TTAGTTGTGACGAGACCGTCTTTGTTGTACTCAAG 129017 30 100.0 35 .............................. TACTCAAGCTGAGTCAACTCTTGCGTGTAGTAGCT 129082 30 100.0 35 .............................. TAACTTTTGGCCGAGTTTTGTTTTGGTGAAGAAGA 129147 30 100.0 37 .............................. TATTATATCGGGTATGCTAAAGTTAAATACGGTGCGT 129214 30 100.0 37 .............................. TCTTTGCGCAGCTCATCGACCGTATCCTGATACCAGA 129281 30 100.0 35 .............................. AAAGACGCAAGCAAAGAAAAAGGCGAGTTACTGGG 129346 30 100.0 37 .............................. TTTGATTGCATAAAAGCAAATGTATCAACAATGACAT 129413 30 100.0 35 .............................. TATTACATTATATATTATAACTCTTACAAGCTAAA 129478 30 100.0 35 .............................. TGTCCATACGGTCGATTTCTGCTTTAGGATCATCG 129543 30 100.0 36 .............................. TCGTTTTTAACGTGGTAAACGACCTTCAGGACGTTC 129609 30 100.0 38 .............................. TGCGCCAGCTTGAGGTCGTGGCTGATGCCTTTGTTGAC 129677 30 100.0 36 .............................. TGACTAAAGCCTCGGAAATAGCTCAAGCGGCAAAGG 129743 30 100.0 36 .............................. GTAAAGGGCGCTTTGTCACGTTCGATTTTTCAAGTT 129809 30 96.7 40 .............................G TCGTATTTATCCATCAAAACGAAATTCTTTTGGCACTCAA 129879 30 100.0 35 .............................. GACTTTGTAGCGGTTGAATCACTGTCGCGCGACAA 129944 30 96.7 0 ........................T..... | AT,C,C [129967,129970,129974] ========== ====== ====== ====== ============================== ======================================== ================== 37 30 99.8 36 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGTGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAACTATGGA # Right flank : TGGTGACGATAAAAAAATAAAACAACGGAATCATATAATTTTAAATCGTTTTTAGCCTCATCCCCCAAACGCCCCCTCAAATCCTTCCCAACTGACGAACCCATAGGATTCAAGCGTCGTCTTGTCGCTTGAAAGGGCTAAGATTGCCTGTTTCAACGCATCCTTTTCCTCTTTTTCAACGTTGATTGTTTTTGCCAAATGCAGTATGACAACACAGCCCAGTGCGAACCTGTTCGTTGTCGTTTCTGTATCTTTCATGCGAAAAAGATATTTGGAATATGATTGGGGCGTTACGGGCCTTGTTTCGATTTTGATATCAATCAGGTTGCCGTTGTGACAGCAGCAGTTGCGGTAAAGCGCGATGCAGTCCATCCAACTGATGAGCTCGTTTACGCTGCAGTCATATATGGATGCGATTTCTTTGCGGTTGCGCTTGCTCATGAGCTTGTAGATGTGGATCAGTTCGCCGAGCGAAATGTGTTGCGAAAGCTCGAGAAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //