Array 1 51345-51967 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024306.1 Thermus thermophilus strain HB5008 plasmid pHB5008b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 51345 36 97.3 37 ..-.................................. AGGTGCCGTGAAGGACCTGGTTCTGCAACCCACGATT 51418 37 100.0 37 ..................................... GGCGGGCGCCCGTGCCGTAGGGGTTGCCCAGCCAGGA 51492 37 100.0 36 ..................................... GTCCAGGGTGGCCCGCACGGGCCTCCCCACCCGGAT 51565 37 100.0 35 ..................................... CCCGGGCTCTGGATCTACGCCGCCCTGCAGGAAGT 51637 37 100.0 37 ..................................... TCGGTGAGCTGGACCGCGCCGTCGTTGGTGAGGCTGA 51711 37 100.0 37 ..................................... GCGTAGTTGAGGAGAGCGCTGGTCTCGATCTGCCCCA 51785 37 100.0 37 ..................................... TGTCGGCGTCCTTTAGCTCCTCAACGAGCTGGGCGCC 51859 37 100.0 35 ..................................... TTGTATCCACCCCTGGTAGGAGGAGCCTAGCTCTA 51931 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 99.7 36 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Left flank : CGTCCCCAGGTAGGGGTAGTGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCCTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCGGGGGGAGGCCTCCTCCGCCAGGCGGGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAGGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGAGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTAACGTGTATGGGTCCTGGGTCCTCAGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTGGCCTGCCTTCCTGG # Right flank : CTCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGGAAACCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACGTAGACGGGGTAGGGGTCCTTCTGCCGCTTGGGGTGGCCCAGGCGGGGCGACCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGGAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCTGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCGGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAGGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 890237-890421 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024305.1 Thermus thermophilus strain HB5008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 890237 36 100.0 40 .................................... TTGCTGATTGTGAATGATGCCCATTCCTCCTTAGAAGGAA 890313 36 100.0 37 .................................... GCTCGTCACGGGAAGCGCAAAAAGGTAGCTCCTAAGG 890386 36 88.9 0 ...............................A.TGT | ========== ====== ====== ====== ==================================== ======================================== ================== 3 36 96.3 39 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : AGGACCCGGGCCCGCAGGAAGCGGCGCCGCTAAGGCTTCCGCAAGCCCCTGGGGGAGCTGACAGCGCTCCAGGCCCAGCGCCTGGAGGCTGCCCTCTTGGGACGGGGGCGCTGCGCCCCCTTTTACTTCTGGCGGTAGAGCGGGCCTTTGCTATACTTGTCAGCAAAATTCCGATGCAACTGGCTTTCTTTGGGCTTTGAAAAACAAAGCTCAGTCCGGTAGCCCCTTCTTCGCCGAAATTTTGACCTGGCCCAACGTTGCGGTGTGTGCTATACTCCCCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTTTTCCCTTGCGGAAGGCGAATATGCGCTTTTTCTTTCATCGCCCCTTCCTCCTGTGGCTTTGCATCGGCATAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACC # Right flank : TCTTGCCCATCAAGCGACCCCTTTGTCGTGGGTGAAGGCCTGTACCCCTCGCGCTAGGAGGCTTTCACGCAGGCCCCGGCGCGCCTGCCCACCCACCTTCCGGGCCCTTTCCCAAAGGGGCGCTCCCAGAAAAGGGGCCCGGGCGGTTCGGCGCCCGGGCCTTCGCGTCGTTCCAAATCTGGGGCCCTGGTTAGAGGACCAGGGTGCCCGCCCCCACGGCGCTTAGGGTGGGGGCCTCGAGGTCCAGGCGGTGGGCCAGGACCTTCCCCTTCCTTTCCCGGAGGAGGGGGAGGAGGCTTGCCACCACCTCCACCCCGTCTATGCGGGTGGGGTTGGCCCCCAGGAAGGCGAGGGCGGCCTCCGGCTCCCCTTCCGCGAGCCTTTCCAGGAAGCCCAGGTCCCGCCTCCTCGCCTCCTCCGCCAGGGTGCGGGTGAGGGGGGTGTCCCCGAAGCGGGGCCCCACGTGGGAGAGGTCCACGGCGAGGACGAGAAGGCCCGGG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1054392-1054751 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024305.1 Thermus thermophilus strain HB5008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1054392 30 100.0 32 .............................. CCGGCTCGTCCCTAACTGGAAGTTGGGATCCA 1054454 30 100.0 38 .............................. CAAAGAATCATCATCTTGCAACTAACCCCCTTTCTTCA 1054522 30 100.0 36 .............................. GTGTAGAGATGATCTTCTCGGCAGGTGTTCCACTCT 1054588 30 100.0 39 .............................. TGGCGTTCAACGCGTACCAGCTTGCCCAGATTTCGTCTC 1054657 30 100.0 35 .............................. AAGTCCCGGCGGTGGTGGCCCGCCTGGACAACATG 1054722 30 93.3 0 ............................TG | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 98.9 36 CTTTTGACCGTACCTATGAGGGTTTGAAAC # Left flank : CTCTTTATGTGGGTCCGCCTGGTGGAGCTGGGGGGCAAGTTGCTCGTCCTCAACCTGGCTCCCCATCACGAGACCGCGGTGCGCCTTCTGGGGGCCGGGCGATATTACCTGCTGGAGTGAAGGGGGTGCGGAATGTGGGCTTTCTGTCCATTGTGTCCACGACAGTTATGAAGTAATCCCAAATCACGTGCCTTCCTCCCGCTGGAGTAGTCGTTTAAGAATTTGCTCCCCTTTTAGGAATTCGGACTCTGGGTTGAAAGATTCCCACACCCCGTCTGGCTGCCTGCCGTTTCCGCCATCTTTCAGGGTTTTGAGTTTGTTGAGAATCTGTGAGAAATTCTGTTCGTTTTTCACAAAGCCAAATGTTCGTCTTGCGTTTTTAGGTTCTTTAAAGCTGAACACTTTTTTGCTCTCTGGCTTTTCCTCGTGTCCCCGAGGGCGTCTTCCAGCCAGCCAGGAATCACCCTGTGAGGATTGGTTTTTTTTAGGTTCCGGACGAT # Right flank : GAAGTGCTGCCCCGAATTTGGACCACCCCAAGAGAGAGGCCAAGGGGTGTAGTCTGAAGGGGTAGCGAGATGCGCAGGTGGTCAGCGAAGGAAAAGGCAAAAATTGTGTTGGAGGTCTTGTCGGGTCAAAGGACCGTGGCCGAAGCCTGCCGGGCTTATGGGGTGGCGGAGTCCCTCCTTTACCGCTGGCAGCGGGAGTTCCTGGAGAACGCCCACGCCGCTTTCACCTCCGGCTGCGCGGAGCAGGAGGCCCGCATCCGCGAGCTGGAACGCTTGGTCGGCCAGATGGCCCTGGAGCTGGAGGTCCTAAAAAAAGCCTCGGGACTCTACCGGCAAAGGAAAGGCGGGAGCTGGTGAAGGCCCTCAAGGGAGCCTACCCCCTCCGCCCGCTTTCCCGGGTCCTCGGGGTGCCCCGGAGCACCCTCTACTACCGGCCCCAGGACCCCCCTCCCGAGGAGGCGGCCCTCCGGGAACGCTTGCGGGCCCTGGCGGCGGCCTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTGACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 1076374-1075969 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024305.1 Thermus thermophilus strain HB5008 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1076373 36 100.0 38 .................................... AAGAAACCGGCGGAACAGGTCCACCCCCTCCTCCAGGG 1076299 36 100.0 35 .................................... GCCCTGGCCATTGTCCTGAGCTACCTGGGGCATCT 1076228 36 100.0 39 .................................... CACTTTTGCCTCCTCATGGCCTGCTCGTAGGCTCTACGC 1076153 36 100.0 40 .................................... GTGGGCTATGGATCCTCCCCCGACTACGGCGTGGCCGTGG 1076077 36 100.0 37 .................................... ACCTACGTTCTCGCCATGCTCACGGGGCTCGCCGTCC 1076004 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 99.5 38 GTTGCAAACCTCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : CCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGCTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCAGGAAAGGGCTTTTTCCCCGGTTTCACGGGTGAGGCGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCCAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCTCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : TGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACAGCCAAAAGCGCCTGCTTTTTTCTCTTCCCTCGGGAGAGCAAACGGTGGTAGAAGGCCCGCATCTCTGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGGAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGCCGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 4 1087243-1088153 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024305.1 Thermus thermophilus strain HB5008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1087243 36 100.0 36 .................................... GTAGAGCTCGTCCTCGTACAGCCTCATAGCACCTCC 1087315 36 100.0 39 .................................... CCAGACGTCCAGCCGGGGCCAGAGGAGGCCGTCCTCTTC 1087390 36 100.0 36 .................................... ATTCGGGACCTCCGGGGAGTGATGAGGAGGTGATGG 1087462 36 100.0 35 .................................... CCCCATGTCCCAGACGATTTCCAGGGCCCTGGAGC 1087533 36 100.0 38 .................................... CGCTTTACCCAGGACGCGGCCCGGGTGGGGGTGGCCTT 1087607 36 100.0 37 .................................... CTCCTTCACGACTCTAGGGGTCAAGAGGCTCCCATAC 1087680 36 100.0 38 .................................... GAGGTAGATGCCAATCTCCTCCAGGGGCGCGGTGGGGT 1087754 36 100.0 37 .................................... AGCTGGTCCCCCACGCGCCCGATGTAGCGCTTGAGCC 1087827 36 100.0 37 .................................... GCGGCCATTGACGAGCGTGGCGTGGAGTCCATCCCCT 1087900 36 100.0 38 .................................... AATCCCAAGGCGGAGATGGCCTATCGCCTGGTCCGGGC 1087974 36 100.0 35 .................................... CTTAGTGGGGAGAGCCCGGAGCATGGCCTGCAGGA 1088045 36 100.0 37 .................................... CCATAACACGGCCATATCGTCGGTCAAGGTCTTCCAG 1088118 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.8 37 GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCTGACGACCGTCGGCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAACAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTGGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTCTACAGAAGGCTGCTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTCCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGGAGCCCCTTCACGCACGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCCCGTCAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 5 1663032-1663516 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024305.1 Thermus thermophilus strain HB5008 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1663032 36 100.0 37 .................................... TCGTAGACAAAGTAGGCAACGGAGCCGCCCAAGTCCC 1663105 36 100.0 37 .................................... CCCACGTCCACTCCATCCGCCGAGTCCACCACCACCA 1663178 36 100.0 39 .................................... TCTCCCTGGGGCGGATGCGGTGCCCCCTCCGGTCTCCCA 1663253 36 100.0 41 .................................... CTCAAGCGCCATGAACCGCTCCCCCAGGTTGTATTTGACGA 1663330 36 100.0 40 .................................... ACGGAGCCGCCAAAGCGTCCAGCACCTCACGCAAACGCTC 1663406 36 100.0 39 .................................... CGCCACCGGAGAGCGGTCCCGGATCTCCCACGAAGCCCC 1663481 36 94.4 0 ................................AT.. | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 99.2 39 GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Left flank : ACCTATCTGCGCGAAACTGATCTTTCACGAAGGAAGAAGCCCCTGAGGGCTTTTGAAGCCGCCATAGGGACGGGGTCACCTGGTGGGGCAAAGAAGGGTTGCGGGGCGAGGTGAGGGCAAGCCCCTTCGCTTTCATAGGCGCCAGCAACTACAGCTATTCGCTAAAATGCGGGGCGAAGGCACGCTAATCGCTTTCTCATTTACTAGTTTCCTTTTTCAAGGTCTTTTCCGCTCCAAAATAAACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCCTTGTCCGGACCTCCGGGCGGGGACCTTGAAAGCCAGTTTTCCCCTTGCCGAAGGCGAATATGCGCTTTCCCCTTCTCATCGCCCCTTCCTCCTGTGGCTTTTCATCGGCACAAACCCCCGAAAACCCCCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAAACCCCCCCTCTGGCGGTGCCGTCCAGGACGGGGTTCTGAGGGGGGTAGG # Right flank : CTGTCTTGCCTGTCAAGCGACCCCTTGATCTAGCTGGGTCGCGTAGTACTCCCTGAGCCTTCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACCGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGAGGCCCTTTTTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATGAGCCCCGCGTAGGAGGCCGCCCTCTTCGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCACCTGGGGCCCCACCCCGGGCAGGGCCATCAGGACCTCGGCCTCGGGGAGGGTGGCGAGGAGGGCCTGGATCCTGGCCTCCACCTCCCCAAGGAGCCCCTTCACGCACGCCAGCTCCTTCTGGAGGAGGGCGAGGACTTCACCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGCTTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //