Array 1 139556-138291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHP010000001.1 Akkermansia muciniphila strain CSUN-58 AmII assembly_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 139555 31 100.0 33 ............................... CCTTTCCTTCCGGGAACAAGGCCAATTTAGCAT 139491 31 100.0 35 ............................... ATTACAAGTCAATTTTGAAAAGTTCCCGTTCATCA 139425 31 100.0 33 ............................... GGTACATGGTAGCAGGAGCCATAGAGCCAGACA 139361 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 139296 31 100.0 34 ............................... CGACAAATTCAGGGATGTCGGGATTCGCGGTCAG 139231 31 100.0 35 ............................... TATTCCGTTGAGGCACATGCCAAATGAGTTGATGA 139165 31 100.0 33 ............................... TGACCAACTCATGATTGCCGTGTTGTTCGTCCG 139101 31 100.0 34 ............................... CGCTCGAATTTCTCAAGAAAGATTTTCGCATGGA 139036 31 100.0 34 ............................... TTGCCAAAAGCCAGAATATCTGTTACGAAGGCTT 138971 31 100.0 34 ............................... TATTTCCCTGCCTGTCTACATGCTCTTGAAAAAA 138906 31 100.0 33 ............................... CATGACAGAGCCGGAACAAACCAGTTACACGGC 138842 31 100.0 34 ............................... TACAGTTCCTTATGAGTGAATGTGTTGCAAATGG 138777 31 100.0 34 ............................... CCCATATTATATCCCCTTTTATTATATCCCTATC 138712 31 100.0 34 ............................... CGGCCTTGACGCGCCAGGGCGGCCATTACATCAA 138647 31 100.0 34 ............................... AACGCAGGCGACGGGCATCAAGGGGCAATACGCC 138582 31 100.0 34 ............................... CAGCTCCTTGATTCTGGTCTCCTGTTGGGCGACC 138517 31 100.0 34 ............................... AGAGTTAAACCCCTTCAGGCCGCCGGAACCCTTG 138452 31 100.0 34 ............................... TCGTCAACTCCGCTCTTTGTAACGCGGCCAAGGA 138387 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 138322 31 87.1 0 .....................A..A....TA | G [138304] ========== ====== ====== ====== =============================== =================================== ================== 20 31 99.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTTTGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTATGATAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACCCGGACCGGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10439-8070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHP010000010.1 Akkermansia muciniphila strain CSUN-58 AmII assembly_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 10438 31 100.0 34 ............................... CTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 10373 31 100.0 34 ............................... TCCTTGTAATATCCCACAAAAAAGAAACAAGAAT 10308 31 100.0 34 ............................... TTAATTTTCCTCCTGCTCAAAAACCTTTTTTAAC 10243 31 100.0 34 ............................... ATCGTCTCCGCCCAACGTTAATTATTCAACCTGA 10178 31 100.0 33 ............................... TTACAAGTTCATACATATTAATAACCAATCAAT 10114 31 100.0 34 ............................... TTTTTTGAAGGTACAGACCGTTTTCCACAAGTCA 10049 31 100.0 34 ............................... TTGTACGATAAAATTGTAGAGGCCGGAGGAGTGG 9984 31 100.0 34 ............................... CGTAAGTTATTCATGGTCAGCAGAAGGGGATGTT 9919 31 100.0 34 ............................... TGCTTCAACCATTTTTGCTAGTTCATTCGGCGAA 9854 31 100.0 34 ............................... TTAATTTTCCTCCTGCTCAAAAACCTTTTTTAAC 9789 31 100.0 34 ............................... ATCGTCTCCGCCCAACGTTAATTATTCAACCTGA 9724 31 100.0 33 ............................... TTACAAGTTCATACATATTAATAACCAATCAAT 9660 31 100.0 34 ............................... TTTTTTGAAGGTACAGACCGTTTTCCACAAGTCA 9595 31 100.0 34 ............................... TTGTACGATAAAATTGTAGAGGCCGGAGGAGTGG 9530 31 100.0 34 ............................... CGTAAGTTATTCATGGTCAGCAGAAGGGGATGTT 9465 31 100.0 34 ............................... TGCTTCAACCATTTTTGCTAGTTCATTCGGCGAA 9400 31 100.0 34 ............................... TTTTTAACAAGGTCTTCAACGGTGGCCAGAGCGG 9335 31 100.0 34 ............................... ATTTTCTTTTTTTTTCTATTTGTTGTGCCGGACG 9270 31 100.0 34 ............................... CTATTGGCACCTTTGTATTTCAGAGCAGGGAAAT 9205 31 100.0 36 ............................... AATATATGTTTGAACAACTTGCAATTTCTTCTATTG 9138 31 100.0 33 ............................... CTTTCTGATTCTGGCTTCTTCCATTGCCTGAAT 9074 31 100.0 34 ............................... CGTCCAATCAGCATCAAGGCGCACTTGCAACCCT 9009 31 100.0 34 ............................... TTTGTAACCCCTGTTATTATGCTTTTTTTATTAA 8944 31 100.0 33 ............................... CGCTTCAATTTCGCTGGGAATCATACCGGGGAC 8880 31 100.0 33 ............................... CTCTGCACTGATAGCCCGGTAAAGCACCCTCAT 8816 31 100.0 34 ............................... CCCCGAACGCCTTTCTTCTTTAACGGTATTTTTG 8751 31 100.0 34 ............................... TCAAGACCTGCAACATTATCGACGAAACATATAT 8686 31 100.0 35 ............................... GAGGTTATCAATGCAGGATTTTACATCTTGCGGAA 8620 31 100.0 34 ............................... CTGATAAATTGTGAAGTGCAGGCCCCCGGCGTTG 8555 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 8490 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 8424 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 8358 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 8294 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 8230 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 8165 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 8100 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== ==================================== ================== 37 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 56612-60471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHP010000011.1 Akkermansia muciniphila strain CSUN-58 AmII assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 56612 31 100.0 34 ............................... GATCGTCTATCGCGTCTCCTCTGACTTTTATTTC 56677 31 100.0 34 ............................... TTCGGGCCGCACGTTAAAGCAGATTCCGAGCAGG 56742 31 100.0 34 ............................... TCTGGTCATCATGTCAAAAACCCGCATGCCTGTA 56807 31 100.0 34 ............................... CCTGAAAACCCGTAACCTCAACTCTATCAGCCTG 56872 31 100.0 34 ............................... CTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 56937 31 100.0 33 ............................... TTTTGCGTCATACGTCATGCTCAATTCAAACAT 57001 31 100.0 34 ............................... TCACCTTTCAGGTAATCCGTAATAACTTTTTCAG 57066 31 100.0 34 ............................... CATTTCAGCCGGGGAAATGTCGATGATTGGAAGG 57131 31 100.0 34 ............................... CCGGTGTAGATAGCTTGAACGACAATCGGAACAG 57196 31 100.0 34 ............................... TCAAAATTAGAGGAATACACCGTTTCAACTTCTC 57261 31 100.0 33 ............................... ATGCGATTATTTTCTTTACTTTTTTACCGTTAA 57325 31 100.0 33 ............................... CCTTTCCTTCCGGGAACAAGGCCAATTTAGCAT 57389 31 100.0 34 ............................... AAGATGATTGTCTGTCTTATCGCCATTTTTGTGG 57454 31 100.0 34 ............................... CTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 57519 31 100.0 34 ............................... TTTCTATTGTTTCGGTTGTGTTCCCCGCCCTACT 57584 31 100.0 34 ............................... CTCAATATCATGCCTTCCCAGTCCGTAAAGTCCG 57649 31 100.0 34 ............................... TTTTGGATATATGTTTCATCAATAATGTTGCAGG 57714 31 100.0 34 ............................... GGTACATGGTAGCAGGAGCCATAGAGCCAGACAT 57779 31 100.0 34 ............................... GGTACATGGTAGCAGGAGCCATAGAGCCAGACAT 57844 31 100.0 36 ............................... TAATATTTCTATACCTATAACAACCACTTTGTGGAA 57911 31 100.0 34 ............................... CTCATGTTAGGTACGGAACAAATATTATTTACAA 57976 31 100.0 34 ............................... TGACTAAACATGATGAAGGGTTCAGGGTTTACCT 58041 31 100.0 34 ............................... TAATCATATCCCTACTACAATGGTAGGAATTAGA 58106 31 100.0 35 ............................... CTTACCAAGATTGAGCTAATCCTTCCAATCATCGA 58172 31 100.0 34 ............................... TGGGCCCATTGACAAATCTGACCCTCTCACATAT 58237 31 100.0 34 ............................... CACGTCGAGAAGAGCGGGGATCATGACGTCGACT 58302 31 100.0 34 ............................... TCCGAGCCGGAAGGCGTCTGGTACGCCCGGCCCG 58367 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 58432 31 100.0 33 ............................... CTTCCGGCAGCTGCACGACGACCGCGCCCGCTA 58496 31 100.0 33 ............................... GTTATGAACCTTATCATGGTTTTTACAAGGATA 58560 31 100.0 33 ............................... CTCACGCTTTTCCAGCGAGAGCAGTTCATCAAG 58624 31 100.0 34 ............................... CGCAAAGAGGACTTGCAATTCATCCCCTCCAAGA 58689 31 100.0 34 ............................... TTCAAGCCTGTTTCCACGGGCTCCGGTGTTGTTG 58754 31 100.0 34 ............................... TTCGTAGTCCTTAAACCAGCGGTAAAAGGCAAAG 58819 31 100.0 34 ............................... GTGCGCCTTGAATTTGGTTGTAAGGCATGCTGTG 58884 31 100.0 34 ............................... AACGCCACCTTGGAAAGCAACGCCAAAGGCGTGA 58949 31 100.0 34 ............................... CCCGGAAGAGATTCCCTTGCGCCAGGCCCAGGCC 59014 31 100.0 34 ............................... CTCCTCTGCCATCATTGACGGCGAGAAGCGGCAA 59079 31 100.0 34 ............................... CCTGCCCTGGGAGCGGTAAAATTTGAAGGCGGCC 59144 31 100.0 34 ............................... AAATGCCTCCATGGATCCGCCGAAGCGGGGAGGC 59209 31 100.0 34 ............................... CAGTACAAGGTCTGGGACACGGAATCGGCCTTCA 59274 31 100.0 34 ............................... CTGTTGGTTAGGGTTAATAGTTAGGCTGCGGCAA 59339 31 100.0 34 ............................... TAATAGTTGAATGTTAGTGTGTTGTTATTCTCCG 59404 31 100.0 34 ............................... CATCTGGGCGGCGGATTGTTCGTGCATGACGGCA 59469 31 100.0 34 ............................... CTCAACTTCACGCGCTATGTGGTAATCCTCCATA 59534 31 100.0 34 ............................... CTTATGCTAGGTACAATACCGCTAGTATTTACAA 59599 31 100.0 34 ............................... CAATAATTTTTCAAATCTGTAGCATATATCCTTC 59664 31 100.0 34 ............................... TGACGGCAAGAAGCTGAATAGCCTTTGCCGTCTC 59729 31 100.0 34 ............................... GATGGACATGCCGATCTTTTCCTCGATTTCGGTT 59794 31 100.0 34 ............................... TTCCGGATGGCACGTCAACAACGGTGGGCGTGAT 59859 31 100.0 34 ............................... CGGAGGCCCACGGGCGCCGGGCGGCTGATTATCG 59924 31 100.0 34 ............................... TCTAACTCCTTTTCAAGGTTAGCACAAAGCAAGA 59989 31 100.0 33 ............................... AACCCTTCTTGCCTGCGGCTTGCAGGGCTTCCA 60053 31 100.0 34 ............................... CGTTGGACAGTGACGCATGGTTATTTTCCGGGAA 60118 31 100.0 34 ............................... TAAAGACGTAGTACATTTTTTCGCCCAGGGCCAG 60183 31 100.0 34 ............................... GCTTCGTGGAAGCCTGCTGAAATACGGAAAACAT 60248 31 100.0 34 ............................... TATATTTTTTCGTAAGAATCTCTAACTTGTTCAC 60313 31 100.0 33 ............................... CTGTGTCAGGGTCCGTGATGGTCCTGGTTTCGA 60377 31 100.0 33 ............................... TCCTCCAGAAATTCCACAAAGTCCTTCTGGCTC 60441 31 87.1 0 .........A................T.G.T | ========== ====== ====== ====== =============================== ==================================== ================== 60 31 99.8 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGGCCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACTGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCGGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : TGTCGCAGACTGAACGGCCTACTATCTCTGGAATGAGAAGGAGCAGTTGGCTATAACACTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTTGTGAAAAGAAACAGATCAGAAGCCTTCAATCATTTCCGGGGTTAACCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGACTTCAATGGAATGGTGAACCTTGGCAGAAGAGTATTGACCGCTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTACCTTCCGGTCGTGCAGAGGAGGCATCTCCTTCAAACATCTGAGGAAGCGCTTGTTTGAAAATGGATGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGCGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTACTGCCGTCTCCGTCATTGCTGACGCTTTTCGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68944-70384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHP010000011.1 Akkermansia muciniphila strain CSUN-58 AmII assembly_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 68944 33 100.0 35 ................................. GGGGTCATGCCGAACCAACATGACCCGGCTAAACG 69012 33 100.0 34 ................................. GATAACTTTTTTCAACTTTTCTTGCTGGTCTTTC 69079 33 100.0 34 ................................. AGATTAGAGGCATCCGTAAGATAGTGTCCCTCAA 69146 33 100.0 34 ................................. TCCTTGTAATATCCCACAAAAGAGAAACAAGAAT 69213 33 100.0 34 ................................. GATGCAGTCATATTTTTCGGTAGTGTCAATGTAA 69280 33 100.0 34 ................................. CGTTTCTCTGGCTGGAAATAGCAGTGAGAACCTT 69347 33 100.0 34 ................................. CCTGTCCAGTCCTTCATAATGCCTCCTTTCTCGG 69414 33 100.0 34 ................................. ATGATCTGCTCCGGCGCCTTTTTGCGCGGCGCTT 69481 33 100.0 34 ................................. GTTTATCCTGCAAAATAGTAATGATTGCAAGGTC 69548 33 100.0 34 ................................. AATATATTCAAAAATAACTTTGCTTCCTCCAGGA 69615 33 100.0 35 ................................. TATCTCGCAAATATCATTATCTGATAAACACAACC 69683 33 100.0 34 ................................. CTGAATCCCATCTCAAAATTGGTAATGACATCGT 69750 33 100.0 34 ................................. GGATTTACGCTATCCAAGTAATGATGAAGCACTT 69817 33 100.0 34 ................................. ATTAAAGTATTCGACGATATGCCTCAAAGCTGGA 69884 33 100.0 34 ................................. ATACCATTCGGCGGGATAAAGCGTTAAGTGCGCT 69951 33 100.0 34 ................................. TTTGAACATTTCACACGGCCTTAATTCGCATCCA 70018 33 100.0 34 ................................. CCCACTATGGGCGTGGTAAGGGAAAACGCGGTCC 70085 33 100.0 33 ................................. CGTAGTTGTATTCCCACGCGTAGAATTGAGCGG 70151 33 100.0 34 ................................. TTCACCGTCTTGACGGCAAACACCCCAGCCAGTT 70218 33 100.0 34 ................................. GGTATCATGGTCACAGGTCAGGTGCAGGACAACG 70285 33 100.0 34 ................................. TCGTTGAGATTATCCAAAGCTATAGCAGACAAAT 70352 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 22 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGGTGATGATGGCCTTCTTCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : CATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //