Array 1 101536-103556 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONA01000010.1 Thermophagus xiamenensis strain DSM 19012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 101536 46 100.0 30 .............................................. ACAAGTATTATGATTCTAATTATAAAGCAT 101612 46 100.0 30 .............................................. ACAAACAATAACATTAGGTTTATATCTTTG 101688 46 100.0 30 .............................................. TTCTTTTGCGGCGGGCATATGGTCCAAAAC 101764 46 100.0 30 .............................................. CCTTTTTAGTACTGTGAGACGCTAAAATCC 101840 46 100.0 30 .............................................. TATGCAATGTCTAAATTTTAATACCATGAA 101916 46 100.0 30 .............................................. TAAACACAGGTAAAATAAAATATTATGAAT 101992 46 100.0 30 .............................................. CTAAAAAAACTGATGATTATGTGTGGAAAG 102068 46 100.0 30 .............................................. AGTGGCACTCATTGTTCCAATACCTACATT 102144 46 100.0 29 .............................................. TACCTAAAACCTTTTTCCTAATTTTTTCT 102219 46 100.0 30 .............................................. ACCTCCTTTGCTACTACTGATTTCTTTGTT 102295 46 100.0 30 .............................................. CCAACTCGAACCACCATTTGTAGTCTTTTG 102371 46 100.0 29 .............................................. ATTATGGAAAATAAAAGAAAATGCGTTTA 102446 46 100.0 31 .............................................. CTTCAGCTGTTACATCCTCATACAAAAGGCC 102523 46 100.0 30 .............................................. TCAGTTCCCAACCAAGTGCCTTCGTAATAT 102599 46 100.0 29 .............................................. GGTGGAATGAAGTTGAGCGTGTAAAAATA 102674 46 100.0 30 .............................................. ATTTCTGGGTCTTTTAAATCTGGTGGCTCT 102750 46 100.0 30 .............................................. TATAATTAAATCAGTTAATCTTTTTGAGTA 102826 46 100.0 30 .............................................. TATTGGTAATGCCATAATCAATTGCCCTCC 102902 46 100.0 30 .............................................. CTGCCTTATGCGCTGATTGCGGTTGGTGGG 102978 46 100.0 30 .............................................. AGGTTCTCCGGATAGTCACCTGTATATTCA 103054 46 100.0 30 .............................................. TAGTAGCCGTAACTCCGCTTTCAGTTATTA 103130 46 100.0 30 .............................................. CAAGTCTCGCCAGCTCTGTTTGAAGTTCTA 103206 46 100.0 30 .............................................. TTATTTCTTGCACATCTCCATGAACTACCT 103282 46 100.0 30 .............................................. TTTTAACCCGCAGCGTATGCTCCCAACTTT 103358 46 100.0 30 .............................................. TTTTAACCCGCAGCGTATGCTCCCAACTTT 103434 46 100.0 30 .............................................. ACGAGCAGATAAACGGAAATATAAGGACAG 103510 46 93.5 0 ........................................AT...A | T [103553] ========== ====== ====== ====== ============================================== =============================== ================== 27 46 99.8 30 GCTGTCAGCAATACTACAAAAATACATTTTGAAAGCAATTCACAAC # Left flank : CATTGTATAGTTGTTTTGAAGGAACCAGACGTAAAATTTCATATCCCCAATTAATTGGCGCTTATGGAGCGACTAAATGAATACAGGATTATGTGGGTCATGGTATTTTTTGATTTGCCAACGGAAACTAAAAAAGATCGCAAAATCTACAGCACTTTTCGAAAGAAGATGCTGAATGATGGTTTTGTGATGTTTCAGTTTTCCATTTATATACGCCATTGTCCCAGTCGCGAAAATGCAGATGTGCATATCAAAAGAGTTAAGAGCTTTTTGCCACCCAAAGGTCATGTGGGTATCATGCGAGTAACCGATAAACAGTTCGGGGATATGGAACTTTTCTACGGTAAAGAAACCGAAAAGAAAGAAACCCCATACATGCAATTGGAGTTATTCTGAAAAAAAAGCCCGGGAAACCGGGCTTTTTAATGTTTTTAATAGCCATTTTTTAATTCTAAATTTCAAGATAAATAATTGAAATTCAAGTTTTAATGGCGTGGTAT # Right flank : AAATCTTACATCTAAAAATCTAAAATCTATATCTCTAACATTTCTCTGTGAAACTCTGTGTGCCCACTGTGTAACACTGTGAAAAAATGAACACAGAGAGCCACAGAGATAAAAATCATAATTTTCGAAATGAGATAAAATGTGTCACACCTACGGCGTTTCGATTCCATCTGCAATCAAAGTCTACCATAATCAGGCACCTAATGGCGCCAAATAAGGATATAGGTTGAAATAAATTGAAATAATGTAGATACAGGTAGCCATAAGATGGATGTTAATTTCGTGCAAAAAAATTAGCCTAACATTTTATTGCCTAATAGCCTAACTGCCCAATGGCCTAATAGTCTATTGGCCTGTCATCAGGCACCTGACGGCGCCAAATATTGGGCATAAAGTAAGCTTGATTGTGAATTTTTTTTAATGCCGTTAGGCATGAAATTTTGGTAGAAAGCGGTTAACAATATTCAGGAAATGCCGTAGGCATGACATTTAGGGTAGGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTCAGCAATACTACAAAAATACATTTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 32709-31720 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONA01000006.1 Thermophagus xiamenensis strain DSM 19012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 32708 37 100.0 34 ..................................... TTTTTTCCGGTTTACTTTGACTCTGTTCCGAAGG 32637 37 100.0 33 ..................................... CAAGAAAATCTCTACCTTTAAGGACTACCTGAT 32567 37 100.0 36 ..................................... TACTTGAAACGGAAGCCTTCGGGTAGCTTAGTTGCC 32494 37 100.0 36 ..................................... TACTCACCTCCTTCGAATTCGTAGAGGTGGCCGTCG 32421 37 100.0 38 ..................................... AGTTGTGTACTGTTGGATAATAATCTGATTATCTGTCA 32346 37 100.0 34 ..................................... AGAAAATCTCGTTCTATTAATCGAGCTTTTGTAG 32275 37 100.0 37 ..................................... AGCACCCAAATCAGATACTTCAGTGTTAGAGCTAGGA 32201 37 100.0 37 ..................................... AATAAGGTATTGTGTAGGTCTGCGCCGTATTGGTTCT 32127 37 100.0 37 ..................................... ATTTTTCTCAAAAAAAATAAAATAAAAAAAATAAAAA 32053 37 100.0 34 ..................................... CTATAGGCTTCTTTAGCCTCGTTAAAATCCATTC 31982 37 94.6 35 ...........T.T....................... CCAGAAATATCCATTCTTGAGGGTAGCTATTGCGA 31910 37 94.6 46 ...........T.T....................... AAAGCAGGTTGGTAACTACCATTGGTTACTACATAACCCAGATAAT 31827 37 89.2 34 ..TG.C.......T....................... CTAAAGAAATAGCTATCCTCATCCTTTCTTTTAA 31756 37 97.3 0 .............T....................... | ========== ====== ====== ====== ===================================== ============================================== ================== 14 37 98.3 36 CTCAGAAAGCAACATCCATTAAAACAAGGATTAAGAC # Left flank : CTGATTTTTTGCCGGTTAACTGAGAAAATATTTCGTCATTAATGAATGTTTTTTAGTAGCAAAAACCTCTTTAATTTCGGAAATCCTAAATCTAATCATCTAAAACCACCATCCAATTCTCTCTGCGTCATCGCGTCTCTGCGTTTATAAGTAATTAGTGCAAAGAGAATCGTGCATAGTGGATTTTCCTTAAGAAAATATTGAAATCTAACATCTAACATCTAACAATCTAACATCTAATAATCTCTCATCTATTACTTGTAAAGTGACCTTGTTGGTTACACTTAAAACTTGTATCTACTCAAAAATATTAATAAATTGCGTTGTTGTTAACGCTCTTTGAAATGATGGGAAAAATTGACAAAAATCAGGAATATTGCATTGAAAAAATTATTAATTTTGCGCTTCGAAAATTTTAGTTAATTTCAATCTAAAAAATATTAAATAGTGTAAAATTTGAATTTCAACAATTTGTTTGTCAATATTTTATAAAATATGCT # Right flank : CGGATTAGATTATTAGGCAGAAGTGGCAAGGCAGAAGGGGAATACCGGGGAATTGAGAATGAAAAATGAAGAATGGATAATTGTTGGCGGAAAGAGATTAAAGCAATGTGTATGTTTCCTTTAGTGAAATTTGAAATCCATTATCTTATATCTAATAATCTCACATCTAACTATCTGTTTTTCTTTACGTCTCTGCGTTTAATGAAAAAGTTCAGAGTTGTCTTTCATTAAAACCCGGAAGTTTAAGAATCATTTCCAAAAACTAGTGTTATCAAAACATGTATCAACCAATCATTCATCGTCTGGCCTCTGGCTTCCGGCTTCTGACCTCTGATAAAAGCAAGGATTAAAATCGTGCAAGGTAGTTAGGCAGAAGTGGCAAGGCAGAAGGGGTATTTGGAAATTGAATAATGAACAATTGATAATTGATAATGAATAATGGAAAATGGAAAATTATTAGCGCTGTTAATATTCATCAGAAGTATACCACCAATATTCAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAGAAAGCAACATCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 96201-78161 **** Predicted by CRISPRDetect 2.4 *** >NZ_FONA01000015.1 Thermophagus xiamenensis strain DSM 19012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 96200 30 100.0 36 .............................. ACACTCCTAACAAAGACTTGAATCGTGGAACTAGCA 96134 30 100.0 37 .............................. GGGAGTGTAAACCGTTTCATCCTTTTTTTGCTTACAA 96067 30 100.0 36 .............................. CTTATCACTATCAACTTAATTAACGGCCATTAGGCG 96001 30 100.0 37 .............................. ATTGTCGTTCTGCTTCCAGGTGCAGATTGTCTTTTCC 95934 30 100.0 35 .............................. ATTCTTGCTTCAATGACTACCCTAAACCGGTCGGG 95869 30 100.0 34 .............................. ATTTCTTCGGCGAGTTGTTTTATGTCGTTGTCTT 95805 30 100.0 36 .............................. ACGACGATGGTTCTATTGATACAATAAAGGAATTTA 95739 30 100.0 34 .............................. TTAAAAAACTTTTCTCTTTTGTCAGGCGATAAAT 95675 30 100.0 35 .............................. TGGTGCTTCTTTTTATTATTGTTTATGTATTGGGT 95610 30 100.0 37 .............................. GCTTCAGTTTTTACCCAATTCTTATCTGGGTAGTAAG 95543 30 100.0 35 .............................. AATTGCCTGTATATTCTCCCTCGTGGTCTTCTATT 95478 30 100.0 34 .............................. ATACAAAGAGGTTTTTTCGGTCAAGGATTGGGAA 95414 30 100.0 37 .............................. TGCGAATAAATTACTTTATGCGTGTACATATTCTAAA 95347 30 100.0 35 .............................. CATTATAATGACTAGTGGAAATTGTTTCTCAATTT 95282 30 100.0 37 .............................. AAGGATTTAAGGAGACTTTGGAATACTGCAAAAACTA 95215 30 100.0 34 .............................. TTAATACATGTGTTTTCATCAATTACATATTTTT 95151 30 100.0 35 .............................. ATTTTGAAGCAAATTGAGCCGGCTTGAGCTCAAGG 95086 30 100.0 34 .............................. ACGTGGGTTCACATTGATTTTTTTCAGGCAGAGT 95022 30 100.0 35 .............................. ATGCCCGCTCTATGGGCATTGAGAACCGTCAAGGA 94957 30 100.0 34 .............................. GGCAATTCAAAAGAGCAAAAAAGAAAGCGCATAA 94893 30 100.0 37 .............................. TACAAAATCAAATGCTTGTATGGTTAGAAGGTACCTG 94826 30 100.0 37 .............................. TAACAAATCACTATTTAATTCATATAAATTAAATAAA 94759 30 100.0 35 .............................. AAAAGATGGTGAGGATTGCTTTTCTGTTCACAGAG 94694 30 100.0 37 .............................. TTAATAAATTTTATTCGTCTAAGGTTTCTTTTATTAA 94627 30 100.0 35 .............................. CAATAGAGGAAATGGACTTTGAGGCATGCGGATAT 94562 30 100.0 37 .............................. TAACAAATCACTATTTAATTTGTATAAATTAAATAAA 94495 30 100.0 37 .............................. CACCTTGCAATTAAAGACATCTATACTAGAATTGTTA 94428 30 100.0 34 .............................. TTTGAATATTAATTTAAACTATTTACTTCTGGAT 94364 30 100.0 37 .............................. TTCCAGTAATGTGTTCTTACCATTATAGTTGATCCCT 94297 30 100.0 37 .............................. AGAAAATGATGATCAAGAAGGAAAGAAAACAGGATTT 94230 30 100.0 36 .............................. GGTAGATATACCAGAAGAAGACATAACAGAATGGGA 94164 30 100.0 35 .............................. GCTTGTATTTGGCTAATTCTCGGACTTGCGGTCTT 94099 30 100.0 35 .............................. AAGAAACATTACTATTGTGATAAAAGAGATGATGC 94034 30 100.0 35 .............................. ATGCTATTACAACCGGTATCGGGCAAGTGCGTACA 93969 30 100.0 35 .............................. AAAATTTGCTTCTGGTGGAATTGTTGGTGGTAATT 93904 30 100.0 35 .............................. GAAGATAACGTACCTTCTTTCACGATTCCAGCATT 93839 30 100.0 36 .............................. TTGCTTTCCTGATAATTACCTGTGGGTCGTATTCTT 93773 30 100.0 36 .............................. TTGACTACTCGCCTCTCATTGATAATGAGTCTGTGT 93707 30 100.0 35 .............................. CTACCGTTGTAGTATCTTACTAATGCGCTGCCATA 93642 30 100.0 38 .............................. CCTATTCAGGTATTTTTTACTGTTACCTTTGGTAATAT 93574 30 100.0 34 .............................. TCATTAAGGAAGACGTAGAAAGGAAAGGTATTGA 93510 30 100.0 36 .............................. AGTGATACTTGAAAATTCACGTGGTGGAGCGAACTA 93444 30 100.0 34 .............................. TTATTAAAGAAAGAGGAAAAGGATTGTGATTGGG 93380 30 100.0 36 .............................. ATTGAGAGCTACAGGCATCATATAGTAAGCCCCGTT 93314 30 100.0 38 .............................. ATTGTATGCAAAGATCATTTATTGACTTTGCTTGCAGT 93246 30 100.0 36 .............................. GCAGCAAGATCTTTTTGATATTGGTTATGGTCAATA 93180 30 100.0 35 .............................. AATTTTGCATTTAATTTTGGCTTTAATGTAATAGG 93115 30 100.0 35 .............................. TACGTTTCTACGTCGTGGATGACTGGAAACGGTTT 93050 30 100.0 34 .............................. AAATTTTTTAGCTATGAAAAAGACCATCTTTTTA 92986 30 100.0 35 .............................. AGTCTCCGTTGACCTGTTTGCGGAATAGCCTGAAT 92921 30 100.0 34 .............................. GCGTTCTTTGGTGGTAGTTGATTTTTTCTTAGGA 92857 30 100.0 35 .............................. TTGTATATCCTTTAAATCATTGATAACGGATAATT 92792 30 100.0 37 .............................. ATCAATCAAATCCTTTAAGTAATCAGTCTGTTTCGAT 92725 30 100.0 35 .............................. CAATAAGCTCGTTAAGAGTACTTGCCGGCATAGAC 92660 30 100.0 35 .............................. ACCCTTTGACGTTAAAGCTTTTGAAAAGCAACTTT 92595 30 100.0 37 .............................. GACACGTTGAAGCTTTATTACAACAAAAAGGCCTCGA 92528 30 100.0 36 .............................. TGATGCGGGGCATTTCTTTTCTATTGGTGCAAAGCC 92462 30 100.0 35 .............................. TACTGCCGCTCTTGGTGTTATTAATCTTACAAGGA 92397 30 100.0 34 .............................. AAAACCAGGCAAAAGATGTAGTTAATTGCATTCT 92333 30 100.0 34 .............................. AACATCTCTTGAGCCATGCGTTCTTCGGCAGTTT 92269 30 100.0 33 .............................. CCAATAAGGGATCTTGGCTATCAAGGTCCTGGT 92206 30 100.0 36 .............................. GTAATAAGAAGATGATAATTGTGATTTTACTTTCTT 92140 30 100.0 34 .............................. ATGTAAGAAATTTTCTTTGGCATATTCATATTCT 92076 30 100.0 35 .............................. AAAAAAAAGGACTACGCTAAAAAAAGTAAAAGCTG 92011 30 100.0 36 .............................. GTTCGTATGAACGGGTTCTAAGCTTTCCTTCAATAT 91945 30 100.0 34 .............................. TGATGTACTCGTCTATAAAAAACACATATAGACA 91881 30 100.0 39 .............................. AAAGAGATGGACTGGGACGGATATCATGGGAAGGTGGTT 91812 30 100.0 35 .............................. TTTTTCTAAATCGGGATGCAATGAAAGATTTCCAG 91747 30 100.0 34 .............................. AAGTTGGTCTCGCATTCAGCTATATGGCTACCAA 91683 30 100.0 37 .............................. TTTTCATCGCCAATTTCTGTTTCAATTTTTGTATTAT 91616 30 100.0 34 .............................. ATTTAATGCAAAGTGCTAAAACGATGCTTAATTT 91552 30 100.0 38 .............................. AATTATGCCAGCAGCGAGAGCTGCTATACCTGCGATAA 91484 30 100.0 39 .............................. TTATCTGAGAATTATGGTTGTTATGGAGATTAAATTATG 91415 30 100.0 36 .............................. GTCTGCTGGCTTAATATCATAAGAGGATTAAAGCCT 91349 30 100.0 34 .............................. ATTTAATGCAAAGTGCTAAAACGATGCTTAATTT 91285 30 100.0 35 .............................. AAGAAATACTGATGGCACTTACTCTTGATGACAAG 91220 30 100.0 36 .............................. ATGTGCCCACTTCAGGAACCAACGCCGCCGCATTGC 91154 30 100.0 36 .............................. TGCTGTAATATACATTTTGTTAACCATGCAAGGCTA 91088 30 100.0 35 .............................. ACACCTTTTCTGAACTGCTCAATTGGAACATAGAT 91023 30 100.0 34 .............................. TTTGCAGATTGATAACAAAAGTATTTCCGGACTT 90959 30 100.0 36 .............................. GAATTGAATGATTTAATTAATGAAACAAAAGACAGG 90893 30 100.0 39 .............................. GTTACAGACTTGTTGGGGTGGCAGGGATGGAATACGCTT 90824 30 100.0 35 .............................. AAGCAAATAAAGCTTTTTCCCGTTTGCTTATCTCA 90759 30 100.0 35 .............................. GCACAATATCTACAAGCAGCTCATCTGCTTTTGCT 90694 30 100.0 36 .............................. CAGAAATAGAGGGCATAGTGGCCAGGGGTGATGAGT 90628 30 100.0 37 .............................. AGCAGGAAAAACGAAAGAAAGAAGAAGCCGAAAGGCT 90561 30 100.0 35 .............................. ATATATATTCACGGTCTTCCAGAATTTTTTTAAAT 90496 30 100.0 37 .............................. ATGAACCTATTGCCGGGGCATTGAAGGCACCGGATAA 90429 30 100.0 37 .............................. GATTGGTGACTGGATAGAGGTATTTGGCGAAAAATAC 90362 30 100.0 37 .............................. GCCTTCGCAATTTGGTGCAATGATCGCATCAAAGAAT 90295 30 100.0 36 .............................. GAGTTAGCTGAAGATTTTGGTGAAACAGCAGACTTT 90229 30 100.0 37 .............................. GATTGGTGACTGGATAGAGGTATTTGGCGAAAAATAC 90162 30 100.0 37 .............................. GCCTTCGCAATTTGGTGCAATGATCGCATCAAAGAAT 90095 30 100.0 37 .............................. GATTGGTGACTGGATAGAGGTATTTGGCGAAAAATAC 90028 30 100.0 37 .............................. GCCTTCGCAATTTGGTGCAATGATCGCATCAAAGAAT 89961 30 100.0 36 .............................. TTGTTTATGGCTTTGGGGTAAATGGCAAACGTAGGT 89895 30 100.0 36 .............................. GATAAATGAATTAATACAATACCTTTTGTTTGTGAT 89829 30 100.0 36 .............................. GCCTTTTCGATGTTGAATTGAAAAGGACATTTAAGG 89763 30 100.0 34 .............................. AACAGTGTCGATGCTGTTAACATGTACGTTGGAG 89699 30 100.0 36 .............................. AACCTACATCTATCTTTCTTAATGTAGGTTTCTACA 89633 30 100.0 34 .............................. TATACATCTGCTTGTTGAATAAATCGATGTCAAG 89569 30 100.0 37 .............................. AGCAATGGGGGTACCTATAGAAACCGCTCTGGGCATG 89502 30 100.0 36 .............................. GTAGTTGTGATGCTTGTTCTTGTGCTTGTGGATCTT 89436 30 100.0 34 .............................. ATAATTAACCTCCGGGAAAATGTATTCGCACGTG 89372 30 100.0 34 .............................. ATTTTTTCACAGGAAGTTGCTGAAACAGTGGCTT 89308 30 100.0 35 .............................. GCCTTTTCGATGTTGAATTGAAAAGGACATTTAAG 89243 30 100.0 35 .............................. AAGCTTGCAACGGTCTTTGACAATTTAGGGTTTTT 89178 30 100.0 35 .............................. TAAACAGATGGATGACTTGGTTATCTAAATTCACT 89113 30 100.0 35 .............................. GGAAATTTGTCATTGAAGACGATACCGGCCTTTTC 89048 30 100.0 35 .............................. TTTCCTCTTTGAAAAAAAATTTCAAGAATTCAACA 88983 30 100.0 39 .............................. TGCTGTAGATTTTAACGTTAAAGGATATACACCTAATGA 88914 30 100.0 34 .............................. GCCTTTTCGATGTTGAATTGAAAAGGACATTTAA 88850 30 100.0 37 .............................. GTTATAAAGAATTTGTTAGACACTTTATTCAAATACC 88783 30 100.0 35 .............................. GTTTGTCCCTTAAATTTTCGTCTATCCTTTCCGGG 88718 30 100.0 34 .............................. TCCTGCTCTAATTTCGTTTCAAGCGCTTTTATGT 88654 30 100.0 35 .............................. GCCTAAAAGAATTTTTTTTCATTATTTCCAAATTA 88589 30 100.0 36 .............................. TAAAACCGTCGGCGGCTATAATGTAAACCTTAAAAA 88523 30 100.0 35 .............................. AGGAATCAACTATAATGGTAAGAACACATTACTGG 88458 30 100.0 34 .............................. AAGTAGATGCCATCACCAAGAAATCGCATTATCC 88394 30 100.0 35 .............................. CGAAGTACATTGACAAAGGAGAGAAAAGCGGTGTT 88329 30 100.0 36 .............................. ATCATAGGGGGGGGTTCTTGGCCGCAAAGGCCGCAA 88263 30 100.0 36 .............................. AATAATGTTTGTCCTTTCCCAGGCTTCTGATTGTTT 88197 30 100.0 37 .............................. GTACTTTGTTTTTGCAACATTCAATAGTATCATAATA 88130 30 100.0 38 .............................. TGCAGACTATTGTCCGCAAGGGCTTCTCAATAGCATGT 88062 30 100.0 34 .............................. ATACATACGGACAATTCAACAAAGGCTGTATTGG 87998 30 100.0 35 .............................. TACCGCAGGAGTACATCACAAAAAAGGATGGTTTA 87933 30 100.0 38 .............................. TTTTAAAGCAGCAGATAATTTACCTTCTGCCGATAATT 87865 30 100.0 36 .............................. ATCATAGGGGGGGGTTCTTGGCCGCAAAGGCCGCAA 87799 30 100.0 34 .............................. CTCAAGTTCTATTTGATGCTTGATTTCTCTATTT 87735 30 100.0 37 .............................. ACTTCTACGTCAAATGTACAGTCTAACTGCACACCTT 87668 30 100.0 36 .............................. TGACTTCTATGCCATTTTGATTAGAAACACAGAATT 87602 30 100.0 35 .............................. CAGCTCATCTGCTTCTGCACAATAATTTGCAAAAT 87537 30 100.0 35 .............................. AAATGAATATAATTAGGGAAAAGATTAGGATTGAG 87472 30 100.0 35 .............................. GTTTGAAAGCCCTGCTTGGCAAAGTTATCTGCAAT 87407 30 100.0 36 .............................. TTGATACATTTTGAAATTTGTCTGTCACAAAACTCG 87341 30 100.0 37 .............................. TTGTCTATGGCTTTGGGGTAAATGGCAAACGTAGGTT 87274 30 100.0 34 .............................. GAGCAATTAAAATGCAACAAAATTGCGTGTTGTA 87210 30 100.0 34 .............................. TGCAAGCAAAGGACAAAAACGTCGCAGCAATTTT 87146 30 100.0 36 .............................. TTTGAAAACAAAGAATTATTTGAAAGTAGTCTGCTG 87080 30 100.0 38 .............................. TGCAAGCAAAGGACAAAAACGTCGCAGCAATTTTAGCG 87012 30 100.0 37 .............................. AACTCGCAACATTGTTACATTATTGGCCAAAAACGGT 86945 30 100.0 36 .............................. GCAACTCTTCAATTTCTGAATAATCAGGAATGTATC 86879 30 100.0 37 .............................. AAGTTTGCTTCTGGTGGAATTGTTGGAGGTAGTCTTT 86812 30 100.0 35 .............................. GAAGGACGTTACAGAACACGCGTCGTCCGTCCTGA 86747 30 100.0 36 .............................. TGCTCATATTGAAGCGAAGGGAAACGTTCGTGCCAT 86681 30 100.0 36 .............................. TCAATAAAATCTGTGGTAATATGTTTGGTAACAAGG 86615 30 100.0 34 .............................. TGCTCACCGAATTGGCCAGAAGGATAGTGTTCAG 86551 30 100.0 37 .............................. CATTTAGATAATTTGAAGATGTTGGACGTTTTTATGA 86484 30 100.0 36 .............................. GTGTTATTGAAGAAATATCAGGGTTTTCGACTAATT 86418 30 100.0 37 .............................. TTCTTTCAATTCAACTCGAGTATGGAAGGGGCAAAGG 86351 30 100.0 35 .............................. CTTGCATTTTCGACTTCAGTTCTCCCCTTTTCAGT 86286 30 100.0 36 .............................. TAACGTCAATAAACGGCGCACCGTCATCACTCGAAG 86220 30 100.0 35 .............................. ATTAAACGAGTATTAAAAATTGAAATCTCTGACCC 86155 30 100.0 34 .............................. AACGGATTGGAGACAATCATTTTCGTTATACCCT 86091 30 100.0 35 .............................. ATGGTGTAACAACGGGGATACTTTGTCCATCAATT 86026 30 100.0 36 .............................. AAAAAATTAATGGGCTGACAACTGCTCTTGAAAACC 85960 30 100.0 34 .............................. CGAAGAAAAATGGAACAAAAAAAGGCTCGAGGCA 85896 30 100.0 35 .............................. GTTATAAAGAATTTGTTAGACACTTTATTCAAATA 85831 30 100.0 36 .............................. GGCGGTAGCTTTCTTGGTGGTTTACTTGGTTTCTCT 85765 30 100.0 36 .............................. AGTAAATATTATCATAGCTTATATTGAGCTTATTCA 85699 30 100.0 36 .............................. GAAAGAGGTAAAAAAACGAATAATGGAGAGGTGTTA 85633 30 100.0 36 .............................. TGGTTTTGCAGGATCCTTATACTCCGCTGCCATGTA 85567 30 100.0 34 .............................. GATCGTTAATCATTACACCTTGTGATTGATCTGG 85503 30 100.0 34 .............................. GTGAAGAGAGATTGAGCAAGACAGGATCTTTCCC 85439 30 100.0 38 .............................. CTATTTTTTTTCTTTTATCTCCTTCCGGCATAGGGTTT 85371 30 100.0 38 .............................. ATTCAATTTTGGCCGTAACCATCTGTACTTCTTCATAT 85303 30 100.0 35 .............................. CCGAAATGGTTGCGCAAGCATTCAAAATCGCGACA 85238 30 100.0 35 .............................. TTATTTATTCAGGACTTAGATAAATGCAGTACTGT 85173 30 100.0 36 .............................. ATCAAATTAGTAATAACTTTGTAATAAGAACTGCAA 85107 30 100.0 34 .............................. ATAACTATTTATTTTTCGATTATAATTTGATAAT 85043 30 100.0 36 .............................. AAGGCAAACCGGCACATGAAGTTCTCCCGTTATTTA 84977 30 100.0 34 .............................. GATGGTGCTGGTTTTGGTTCCATAGGCGCAGTAG 84913 30 100.0 35 .............................. TAATTAATGACCTACACATAACTAATGCAGATGAG 84848 30 100.0 34 .............................. TTGTCAGGGCAAATGCTTTCCCTTGTTTGGTTAT 84784 30 100.0 37 .............................. TTCAGGATATGTTTGCTGGTAGTAAATGACAGGAATT 84717 30 100.0 35 .............................. GGTACAAATTGGGAAAACACTCTATTTCCCAAAAA 84652 30 100.0 34 .............................. GACTGTCTGGATTTGGGAAAACAAGTCCCCGCTC 84588 30 100.0 35 .............................. ACATTTCCCCAATCAACAGCATTTCGTTGCCCGGT 84523 30 100.0 35 .............................. TTTTCTGTCACCGAATTGGAAACTACGTTGAGAAA 84458 30 100.0 36 .............................. CCAAAATCCGGTTACAGGCTTGTTGGTGTGGCAGGT 84392 30 100.0 37 .............................. TGCATAGGTTGCGTTATTGGTTGTGTAGTCGGTTGCT 84325 30 100.0 36 .............................. AAATAATCTTTATACTAAATTGGGTTTTTCTTTAGA 84259 30 100.0 35 .............................. TTTGATTGGTTAAGCATGCCAGTAGAAGAAGTAAA 84194 30 100.0 37 .............................. TTTTTTTCCTTCAATTTCACCCAAAACAGCGAATTCA 84127 30 100.0 37 .............................. TTATACAATTTAGCGGCTTCGGCGTTAACAATTTCAA 84060 30 100.0 36 .............................. GATAGAATGAATAAAGTGTTGATTGAAGTATTTGAT 83994 30 100.0 35 .............................. TTTAAATTTTTAAATCATATATAAAGGTTGTATGT 83929 30 100.0 36 .............................. ATTTAAGGCTTTTGTTGTAATAGGAAAATATTCTTT 83863 30 100.0 36 .............................. ATATATAGTATTTGTATTAAAATCAGTATAAATATT 83797 30 100.0 34 .............................. ATGACCACCACCAATCACTATTTATATTTTTATT 83733 30 100.0 35 .............................. TGATAAGATAGTAAAGGAAGAAAGATTGAGACAGA 83668 30 100.0 37 .............................. ATGTGCTTGTAATGTTAAATAAATGCGGGGTGTATGC 83601 30 100.0 37 .............................. ATGGAATGGGAAGTATTTTGGTTGACCCGGGAAGCAG 83534 30 100.0 35 .............................. CTAATGAAGAAACAGCTAAACTGGTAAGAATAATA 83469 30 100.0 34 .............................. CTAATGAAGAAACAGCTAAACTGGTAAGAATAAT 83405 30 100.0 37 .............................. ATGGAATGGGAAGTATTTTGGTTGACCCGGGAAGCAG 83338 30 100.0 35 .............................. TTAAACAATGCGGAGAAATAGCTACCGACCAAATA 83273 30 100.0 36 .............................. ACCAGAGAATATTGAAGATTTAATTGCTGGAATTTC 83207 30 100.0 38 .............................. ATAAGAAAAGGTTTTAAAAACACCACTAATTCAAGAAT 83139 30 100.0 34 .............................. AAGAGTCAAACTTTTTACAGAGCAACGCCCAATC 83075 30 100.0 35 .............................. ATTTAAACAGCTCTTCTTTACAAATCTTGTCTTCA 83010 30 100.0 37 .............................. TAGGTGGTGCCAAGTCTTTTTCTTCAAGGTCTGGAAC 82943 30 100.0 36 .............................. ACGATTGTTTGCCGGCCTGTAAACGGTTTAACAACC 82877 30 100.0 36 .............................. AAGGAACACCCCGTATATTTTTTGTCCCCGGCAATT 82811 30 100.0 37 .............................. GTTTGTGCTTAAGATTTCAACTGATTTCATTTTTTTT 82744 30 100.0 37 .............................. AGCGGCCAAAATAGTTCCTTTTTATCTGTTTCTCCTT 82677 30 100.0 36 .............................. GGCGTAATGGAAAATATTATGAGTGCTGAAAGTTTA 82611 30 100.0 36 .............................. TGGGTAAAAAAGCTATTTCTACGAGGATGAAAAAGA 82545 30 100.0 37 .............................. CCGGTATTGGTGCGCTTGTGGTTGCATTAGGTTCTTT 82478 30 100.0 37 .............................. ATGGATGCCATCGGGGCTGTATTTGCTGTTATTGTCG 82411 30 100.0 36 .............................. TTCTGTTGATTCAAGTTACCGCAAAAACGGGGTATT 82345 30 100.0 35 .............................. ATTTCCATGGGAAAAAGTAGAGATTAAACAGGAAC 82280 30 100.0 36 .............................. ACGATTGTTTGCCGGCCTGTAAACGGTTTAACAACC 82214 30 100.0 36 .............................. AAGGAACACCCCGTATATTTTTTGTCCCCGGCAATT 82148 30 100.0 37 .............................. GTTTGTGCTTAAGATTTCAACTGATTTCATTTTTTTT 82081 30 100.0 37 .............................. AGCGGCCAAAATAGTTCCTTTTTATCTGTTTCTCCTT 82014 30 100.0 36 .............................. GGCGTAATGGAAAATATTATGAGTGCTGAAAGTTTA 81948 30 100.0 36 .............................. TGGGTAAAAAAGCTATTTCTACGAGGATGAAAAAGA 81882 30 100.0 37 .............................. CCGGTATTGGTGCGCTTGTGGTTGCATTAGGTTCTTT 81815 30 100.0 37 .............................. ATGGATGCCATCGGGGCTGTATTTGCTGTTATTGTCG 81748 30 100.0 36 .............................. CTGTCATCAGAAGAAGTCAGGTAAATTGAGCCTTGT 81682 30 100.0 37 .............................. TTACATCATAAGGTAGTAGTTGTGTTTTAGGTCTATT 81615 30 100.0 34 .............................. TTGGTAGCTCTAATTTTGTTGATAACCATTTCAT 81551 30 100.0 34 .............................. TTTGGAATTAATATCGATGCTATTTCGCAACAAA 81487 30 100.0 34 .............................. AAAGAAATAAAAGATGAAGCAGCTACGGCAGCTA 81423 30 100.0 36 .............................. TAGACACAATAAGCCCCTCTGAAAAATTGGATGTTA 81357 30 100.0 35 .............................. TGCTGCGGTATTGAATTATGGGCTTGTTAGAGCTT 81292 30 100.0 37 .............................. ATCATAGGGGGGGTTCTTGGCCGCAAAGGCCGCAAAA 81225 30 100.0 37 .............................. TACCCATCGGGCAAATGCCAAATTTTAAGGCCTTTTA 81158 30 100.0 35 .............................. AGTTGCGTTAATGCAGAAGCATAGTCTGCAGCTGC 81093 30 100.0 35 .............................. TTAATACTATCAGCGACTTTCTTTTGCTGTTCTGG 81028 30 100.0 36 .............................. GTTGCCACTTTTAGGGCTTTAAAAGGCCTTAAAATT 80962 30 100.0 36 .............................. GACACAGCACAAATGGTAATTGAAATGTACAGGATT 80896 30 100.0 36 .............................. TCTAAATCTGCACCTCTATAGGCTCTACTAACATCT 80830 30 100.0 36 .............................. ATGGCATCCATTGCCTGCTTAAGTTTATCGGAACCT 80764 30 100.0 36 .............................. TCTTAATATGTATATAAAGGCAGCTTGCGGAAGATT 80698 30 100.0 36 .............................. AAAAAAATAAGATATATAAGAGATTGGCTTAATGGA 80632 30 100.0 35 .............................. TATAAAATTGTTAAAATTTTAGAATAAAAAAAATA 80567 30 100.0 36 .............................. GTTAATTGTTTCGTGATTAGCCTTAAGCAGTAGGTG 80501 30 100.0 35 .............................. ATTAACGAAAGCAGCACACCAGGCATATCCTTTTG 80436 30 100.0 35 .............................. GGTCAACCGAGCGGATGGATATCGGGTTGCTCTAG 80371 30 100.0 35 .............................. ATGTTCAGATCGATTAAGTAATTAAATTTCTAACC 80306 30 100.0 37 .............................. ATGTGGCAGGTCTCACGGGAAACAGAAAAGCAATAAC 80239 30 100.0 36 .............................. GGCAGAAGGAACTGTAAAGACTTCGATCAATACCGA 80173 30 100.0 35 .............................. AAGAACATCGTTAATATTCGGGAAATTGACAGATG 80108 30 100.0 34 .............................. TTCATTCAAAACTTACAAAGTCCTTAGACAAAGA 80044 30 100.0 38 .............................. TAAATTTTCATGACTACTGATTTTAAAATGGTTATACA 79976 30 100.0 37 .............................. CTGAATTAAGGTTTTTTAACAACCATTTGCAAAAATT 79909 30 100.0 35 .............................. ATAAGTGTTTGAAAGACCATCCCTTAATGCTTTCA 79844 30 100.0 37 .............................. TCAAAATATAATTGATAGTGACGAGAAGCTTAAAGAG 79777 30 100.0 35 .............................. AGGGAAACAGGATAGTTTTCATTGCTCCTTATTTT 79712 30 100.0 38 .............................. TATGGAAGTTTTGAGAGCAAAAAAAGTAGGTAAAAAAA 79644 30 100.0 38 .............................. TTCGCAGTCATTGCAGCATCAATGGCATCTTCGATAAG 79576 30 100.0 35 .............................. GGTAAAAGCCCATACGCTCAAATCGCCGTTTAAGA 79511 30 100.0 39 .............................. GGAAGGGAATCGTTATTTCCATCCATTTGTCGCCCTGAT 79442 30 100.0 34 .............................. TCTTCATCTGTTTCGATATCATCATTCAATTCAT 79378 30 100.0 36 .............................. TCAATAAGTATCAAGATGCTTACATAAGCGCTAAAA 79312 30 100.0 39 .............................. GAAATGCTTAAGCGGTTTGTGAGTGGTACTTTGGCACCT 79243 30 100.0 38 .............................. AAAATAAAGACTTTTAAAATGTTTAATATGTTGATATT 79175 30 100.0 36 .............................. AATAGTACGCACTTATGAGCTGTTCGGAGGTTATAA 79109 30 100.0 35 .............................. ACCGCAAGGTACATCTTGAAACTTGCCTTTTTGTT 79044 30 100.0 37 .............................. GAGGCTTTTTTAGAAGTTAAAAAAGCATGGTACGAAG 78977 30 100.0 36 .............................. GACTCCGGCCGGTTTATTTAGCCGGAGTCGGTTTGG 78911 30 100.0 34 .............................. AACGGTATATTTTCGAGGTTCCGAATAGTACGCA 78847 30 100.0 36 .............................. GAAATAATCAAATTTATCAAACTTACTGAAAAATCT 78781 30 100.0 38 .............................. AATGTCTCTTCATCATCTGAATTTTCACCTAAGTAAAT 78713 30 100.0 37 .............................. TATTATAAAAAGGAATGTTTTTATCATTATAGGTAAG 78646 30 100.0 36 .............................. GCCTTAATGTCTTTTATATAGCGAAAAAACCAATCC 78580 30 100.0 35 .............................. TGTATCTACGTAATATAACTTTGTTCTCGATAATA 78515 30 96.7 35 ..........G................... TGACAAATACAATTCGTGCCCATAGCTCGCTAATA 78450 30 96.7 35 ..........G................... TTTGAATATCGTTGGAATTAAAAGCATAAATTTTT 78385 30 96.7 35 ..........G................... TATGTTAAGACAAAAATTTTTTAGGGAAAGGTATT 78320 30 96.7 34 ..........G................... TACAAGGGAAAAACCAACAAAGCATTTATATATT 78256 30 96.7 36 ..........G................... GGGTATGCCTCTATTAAATCATTAAGATGGACCCCA 78190 30 83.3 0 ..........G..............ATT.C | ========== ====== ====== ====== ============================== ======================================= ================== 275 30 99.9 36 GCTTCAATCGAACCATAGTGGAATTGAAAT # Left flank : TATAAAATATGTACATCATATTGGTTTACGACATAGGCGAGAAACGGGTAGGCAAAATGTTAAAACTTTGCCGTAAGTATTTAAACTGGATTCAGAACTCGGTATTTGAAGGAGAGATATCGGAAGTTAAACTCACGGAATTAAAGCTCAAGGCAATGAAAATAATGGACCCGGATTCCGATAGTTTGATTATCTTTAAAACTCGTCAGGAGAAGTGGCTCGACAAAGAAATTATTGGAGTGGAACGCTCTGATATCGATAATTTTATATAATTAAGAGTTGTCGGTCTATCATTTTCAAAACAAACCGGCATAATAAAAAACAACCAACCCGCCACCCAATGTTCTTTGACATACTGTAATTCAACAACATATACCAGGTTGTCGAACCCCCTACCATTTTCTATTATTGGATATCGACGACTTTCTTTACTTTAAATCCATCTATTTACCTATCTTTATCCCAAGTAAACACGTTATTTTTTTTAACCCAATCAACGG # Right flank : AAGTTAACCAGTGCACAGGCAGAAGGCAGAAGGGATTTTTACTGGTTAGCCCGTTAGGCCGTTAGACGATTAGGTCGTTAGGCTATTTATGCCTACTTTATTTCTATCATATATCTATTTATTTCCACCTATATCATTTTTAAAAACCGGTTTCTGACTTCTGACGTCTGGCTTCTGACTTCCTTCTTTTATCTATCCATCCAGCATCTGAAAATTTATTTTTTCTCTGCGTCATGGTGTCTCTGCGTTTTTTGAGTCTATCGGACCATAGTGGAATTGTTACAAATTAACCAGTGCACAGGCAGAAGGCAGAAGGAATTTTTACTGGTTAGCCCGTTAGGCGTTAGACGATTAGGTCGTTAGGCTATTTATGCCTACTTTATTTCTATCATATATCTATTTATTTCCACTTATATCATTTTTAAAAACCGGTTTCTGACTTTTGACGTCTGGCTTCTGACTTCCTTCTTTTATCTATCCATCCAGCATCTGAAAATTTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATCGAACCATAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //