Array 1 238417-236739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTE010000006.1 Salmonella enterica strain SG7 NODE_6_length_401931_cov_120.382074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 238416 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 238355 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 238293 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 238232 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 238171 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 238110 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 238049 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 237988 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 237927 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 237866 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 237805 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 237744 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 237683 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 237622 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 237561 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 237500 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 237439 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 237378 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 237317 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 237256 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 237195 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 237134 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 237073 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 237012 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 236951 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 236890 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 236829 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 236768 29 93.1 0 A...........T................ | A [236741] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255878-255057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTE010000006.1 Salmonella enterica strain SG7 NODE_6_length_401931_cov_120.382074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255877 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 255816 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 255755 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 255694 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 255633 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 255572 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 255511 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 255450 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 255389 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 255328 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 255267 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 255206 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 255145 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 255084 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //