Array 1 151-1459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000555.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_664_length_1830_cov_12.5055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 212 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 273 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 334 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 395 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 456 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 517 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 578 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 639 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 700 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 761 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 822 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 883 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 944 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 1005 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 1066 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 1127 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 1188 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 1249 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 1310 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 1371 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1432 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 151-1398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000564.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_680_length_1769_cov_33.618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 212 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 273 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 334 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 395 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 456 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 517 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 578 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 639 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 700 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 761 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 822 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 883 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 944 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 1005 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 1066 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 1127 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 1188 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 1249 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 1310 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 1371 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1270-265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000614.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_742_length_1523_cov_5.74298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1269 29 100.0 32 ............................. CTGCGTTTGCTCCTGCTTTTCTAACCTCTCGT 1208 29 100.0 32 ............................. GTCAGGGGGTCAATGTCTCCAGAAACATTCGC 1147 29 100.0 32 ............................. GCAGGATACAACGGCGCGTGGATACAGCAGAT 1086 29 100.0 32 ............................. TTGCCCGCTGGATGTAGTGCAACTCCAGCAGC 1025 29 100.0 32 ............................. CGCTGCAACAGGGGCACAGTGAGTGGCAGGAA 964 29 100.0 32 ............................. TAACGCTGTTCTGCATACGCTCTACCGCGCAC 903 29 100.0 32 ............................. CGTTTATGGCCGTTGTCAGAGCTGCAGAACGT 842 29 100.0 32 ............................. GGTATGGTGAAAATGATACACGTTCTGAAAAT 781 29 100.0 32 ............................. CGAGAACTGTAGAGCTCGCGTTTTCGTCGGAG 720 29 100.0 32 ............................. CACTAGGAGTAACGGAAATGGTATGGCGGTAC 659 29 100.0 32 ............................. GCTCCGGCCACAGGGATCGGTTCTCCGCATTT 598 29 100.0 32 ............................. CCGATCTCGACTGTGCAGCCTGGATTTTTGAA 537 29 100.0 32 ............................. TTCCACCGCCTTTATAACCTCGGTCATAATGC 476 29 100.0 32 ............................. CGGCAGATTCGCACTGCGCCGGATGCCGTATT 415 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 354 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 293 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAG # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9-1319 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000655.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_811_length_1320_cov_5.85913, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 ............................. CGCCTACGAGCGTGGGTTAGCTGACGGCAAAA 70 29 100.0 32 ............................. CCTCGCATAAACGAGGCTCTCTCTGAATCTGG 131 29 100.0 32 ............................. ACATTCGATCAGACTGAAACAGCGTTGTGGCG 192 29 100.0 32 ............................. GTGCGTTGCCAGGTTGCTTTCAATGATGGCGT 253 29 100.0 32 ............................. GTGATTGTATATCTTGATGCATGACAGGCTGT 314 29 100.0 32 ............................. AGATTGGCGGATCTGTTTATAAAAAATTCGAC 375 29 100.0 32 ............................. CTGATGGATGCGGTTAACGCCGTAATGGGCTA 436 29 100.0 32 ............................. TACTGTGTATTCATTCCGGTGAGTGAATACAC 497 29 100.0 32 ............................. CAGTGGCCGATATGCGGCTTGGAACGCCAATT 558 29 100.0 32 ............................. CCAGATGATGCATATTCCGATACTGTGCGAAA 619 29 100.0 32 ............................. GAAATCAGTACGTTTGTGGGAGCGCTTTGAAG 680 29 100.0 32 ............................. GAATGGTTAGCCGCGCAGTCACCAACAAGACA 741 29 100.0 32 ............................. TTAAATTGTATGCATCCTCATATGTCACCGAG 802 29 100.0 32 ............................. GATTACGGTCCCACCGTAATGCTGAAAAATAC 863 29 100.0 32 ............................. AGGTGTCCTGGGAGGTTAGTACCCTGACGGAT 924 29 100.0 33 ............................. CTGGAGAGCACTGTGGGCGTTGATCGCGCCGAC 986 29 100.0 32 ............................. GCCGAAATGTGCGCACAATACCAGTCGATGGA 1047 29 100.0 32 ............................. GAGCACGACGAATTGTTGTTCTGGCTGCTGTC 1108 29 96.6 32 .....T....................... CCCGCGCATGATGTGCGGGTTTTTTATTGGCT 1169 29 100.0 32 ............................. GTTATGGTTCAGAGGCACGTTGAGAGAGCTCG 1230 29 100.0 32 ............................. CGCCTACGAGCGTGGGTTAGCTGACGGCAAAA 1291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AGAGCTCGG # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1626-71 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000180.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_190_length_8478_cov_12.9718, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1625 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 1564 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 1503 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 1442 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 1381 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 1320 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 1259 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 1198 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 1137 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 1076 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 1015 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 954 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 893 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 832 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 771 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 710 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 649 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 588 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 527 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 466 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 405 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 344 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 283 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 222 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 161 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 100 29 93.1 0 A...........T................ | A [73] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 782-264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMF010000118.1 Salmonella enterica subsp. enterica serovar Anatum strain 363 NODE_121_length_11349_cov_31.7928, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 781 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 720 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 659 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 598 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 537 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 476 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 415 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 354 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 293 29 93.1 0 ............TC............... | A [266] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //