Array 1 2576-2350 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPH01000007.1 Clostridium sporogenes strain AM1195 AM1195_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2575 29 100.0 36 ............................. CCGATAGTAAGACTGCTAAAGCAAAACTTCCGATTA 2510 29 100.0 38 ............................. CAAGTGGAAGTCCTTTCAATATTTTTTTTAGTTGTTAA 2443 29 96.6 36 ................G............ TGAGTATTCCAGTTATAGAAATTGGACTATTATTAA 2378 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 37 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GAAGGTCAAAGAGTTGAACAAGATACATTTGTTTGTAAGAGATGTTGGCATAAGATGAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTTATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAACATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCATATTTTAATTTTAATTAATAAATTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAATACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TGATGATGGATAATTATAGAATTAATATACTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTATAAAAACAAATAAGAACATTTTTATTATATCTTTATTAATTAGCAAACTGTAGTTCCCCCTTTCTATTATTTGGGTTGATTTATTAAATTTTACTTAAATATGTCATAACAAACAACATTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTGAATATAAAAAAGATTGTGCAAATTAAATTTAGATTAATAATAATTTTTTTTAACACGGTATATTAAAAGAATATATCGTGTTTTTTTATTTTGAGAAATATTACTATATGTCTAATATAAATAAAGCCAAAGTATTATTGTATTCACTAATTCTTTAAATTATATTAGTAAAAAGGAACAAATTAAGTATAAAGGAGGCGCCTTAAATGAATATAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 51981-52396 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFPH01000007.1 Clostridium sporogenes strain AM1195 AM1195_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 51981 29 100.0 37 ............................. TGTTTTTATCTCCGCTTTTTATATTTAATTAGTTATG 52047 29 93.1 30 .................G..........A TTGCAAAAACCTCCTATTTGTATAGCTTAA 52106 29 96.6 36 ........T.................... CTATAAATTTCAGCATGAAAGTCGCAGCAATTATAA 52171 29 96.6 37 ........T.................... CTTAATGAGGAGGTTGTTTAATGAAGAAAAAAATAAG 52237 29 96.6 36 ................G............ AGATTATAAGTTTTACACAACTATGTACTGTTATTG 52302 29 100.0 37 ............................. TACCGAAAAACAAAAAAAGATATAAGATTTTTCATAA 52368 29 82.8 0 ...........T...GG..A......G.. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.1 36 TTTAACTTCTACATTATATGTATTTAAAC # Left flank : CGTAAGCTGGGATATCTATATATTACTAGATGAAAATAGTGTTGATAAAAAAATTCTAAATAAATTAAAAGATTATTTGTTAAATAAAAAATGTCACTTTATTCCTTATCTTGGCAAAAATGATCATGCTGCTGATATCACAAATGTTGAACTTATTAACTTAAAATCAATACAAGCACATGAAAAATTAATAAGAATACAAAGTTTATTTTTAACGAATAATTTTAATATTACAGGAGAAAAACATAATCCTAATGAGAGATTAATAATATTAAAAGAAATGTTGCCAACTGAATTAGATGAATTCGATAACTCTTACAAATTTAGCAATTTATCTTTTACTAATCTCATTGTTCAACCAAATACTAGTAAAACATTAATTTATCAGGATTCACTAAGTAATTTATATTTTTTTTAGGAATTTAAAAGTCATATAATGAAAGCATGTTATAATAATTATATAAACATTTTATTATTTACAAATGGCTTATTTTCATTGG # Right flank : CAAACTATAAATAGAAAAAGAGAAGGTGCAAAAATAAAGAAAATTTTACCTGATTTATATATAAATGAGTCCTCAGATGGGTTAATCTTAATAGATAAAATTTCAAAAATCCATTATGAACTAGCAACTGATACCCCTTGTGATAGAAATGATTTAACAGGCTTAAATACCGATTATCAAAACGGTAACTTAAATATACTTATGGAGATTAAGGAAAATTTATCTTTTACTCATATAGTTAGAGATTCACATGGATTTATTTTTGCAGTAGAAATAGCAGATTTATAAAAAAAAGAATACATTTAACTTTTATATGAAATATATTTAAAGATAGTTGTTTTCATTGTAAGCTCTAGTGGCTTTATATGTTTAACTTATACATTAGATGTATTTAAACGTTGTAAAATATGTAGGTGAAGCTAAGGAGTGTAAGTTTAACTTCTACATTGGATGTATTTAAACTCATCGTGCACTTTTCTTATTAGACAAAATTTATCGTT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACTTCTACATTATATGTATTTAAAC # Alternate repeat : TTTAACTTTTACATTATATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //