Array 1 96029-95862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000002.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 96028 33 100.0 34 ................................. TAAACAAATTACTTTTAGTGTTATGTATAAATAT 95961 33 97.0 34 .........A....................... CAGATAAATCACTTGTGATGTTATGTTTAAATGA 95894 33 93.9 0 ...G.........G................... | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 CTACAATTTGATTAGGATATTATCTTAATTTGT # Left flank : ATATATGATGACACTTAGAAGGGTTATACCAACTTATCAAGACGAAGGAATGTTATGGCATCAAGCATTTTTAGAGACAAAAGACCAGAATGTTCAAATTGAACCCCCAAAGTATTCTAAAGCAGTTTTTTATGATACTGGATATAAAGAAGATTATGTAGATGTTGAAGTACAAGTTGCTGTATCTGGAAAGTATAAAGATACTGAACATGTTAAATTTAAGACTGTTCCAAGTGTGACTGCTGCAACTGCAATTGTTAATGGAAATTTCAATCAAGTTGCAGACGCTTGTGAGGCTATTGGTAATTGGATATCAGATAATAACTATGATGTGGATGGTCCTATGTTTAATATTTATCATGTAAGCCCTGGCAACGATAGTAATCCTGATAATTGGGTAACAGAGGTATGCTTCCCAGTTAAAAAGAAGTAATTTTTATATTAATTGGATAATATTTTAATTTGTTAGACAAATTACTTTTAGTGTTATGTATAAATAC # Right flank : CAGATAAATCAATTATAAGATTATATACTATCCTTATACTCTAGTTAAATATATTTTAATCACTAATATAAATTAGTTTTTTTAACAAAACAATAAAAGAGTAAAGTACAAATAATTCCTTTGTGCTCTACTCTTTTTAACTTTCTTTAGACAATAATACAATGATAAATGTAAAAAATTATATATTCCATTCTATAGAAATGTGCTCACCAATAACATGTATGTTGTTAATCAATATATTATATCAAATTATATCAAAATTACATAAACCTTATAGGACAATCATATCTTATTACAAGAAAAATGTCTTATCCATATTGAATAAGTCATTCAGTTCATATACAAAGTCAATTTCATTGAGAAACATTTAATATATGTTTATAAAAATTTCATACTATTCTTTCATATTTGCATGTGATATAATTTATTAACTCATAATTTTGTTAATCAGTTGTGATTGTAGATTATTTATATAATCTAATATTTTTAGAAGGTGGTGT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACAATTTGATTAGGATATTATCTTAATTTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 242849-244267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000001.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 242849 29 100.0 38 ............................. ATTGCTATTATTAGCGTTGGTTCAAATGCTAAATTAGT 242916 29 100.0 37 ............................. CATTATTGTTGCTGAATAAATCCACTTTTCATTTTCA 242982 29 100.0 38 ............................. TCCTTTTCAAATTTTACAACATCAGAAGTTAAAATATC 243049 29 100.0 37 ............................. CTAACTCTTCATTTTATTAAATATAAAAATTAAACAA 243115 29 100.0 35 ............................. AATTTATCCTCTAAATTTAAAAAAGGACTATTAGG 243179 29 100.0 38 ............................. AAAGACAACGACTCATTCTTGGTATTTGACATAGAAAA 243246 29 100.0 37 ............................. AGAAATATCAGAATTTTGTGGGCTTGGTTGGGAGATA 243312 29 100.0 38 ............................. AAAAACAAAAAATCCAACTTTAGATTATTATTTTGATT 243379 29 100.0 36 ............................. ATACTCATTATTGTAAAACATATAATCACCTCCTAT 243444 29 100.0 39 ............................. GCCAAACAACTTACTTAAACGTTCTTGTTCTGCTTCTAT 243512 29 100.0 37 ............................. TATAAAATTCTTCTTCTGTAAAGCCTTCTTTGAGTCT 243578 29 100.0 37 ............................. CTCTTTTTGAACACAGATTGCTTTCTCTTGCTAAAAT 243644 29 100.0 37 ............................. CTGGGCGTTTCTGTTTTTTCAAGAGCAGTTGACTTAA 243710 29 100.0 37 ............................. CGACAAAATTAACTATAACCTCGTAATTATCTAAGTG 243776 29 100.0 38 ............................. ATAAGTTACAGCAGTAAAAAGACTGACAGGAACAAATC 243843 29 100.0 37 ............................. AACATTCTGCTTACATCTGATAGAAAAAACAGTTCTT 243909 29 100.0 38 ............................. CATTGAATCTGCTTATTAATACTATATTTACATACTAA 243976 29 100.0 37 ............................. TTGATAAATATACACCAGTAGAAGATTAGATTAATAG 244042 29 100.0 37 ............................. CGCTTATAATTTTTAATTGCATATTCAATAAAAAATT 244108 29 100.0 37 ............................. TATTCTTTTGCCAACTTTATTCCATTATTCAAATCTT 244174 29 96.6 36 ............................C TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 244239 29 86.2 0 ................G....T.CA.... | ========== ====== ====== ====== ============================= ======================================= ================== 22 29 99.2 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGAATTCAATGAATTTGAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 555587-556996 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000001.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 555587 29 100.0 37 ............................. CATTGATTATCTCGCCTATTCCAACGACTTGGTCTTG 555653 29 100.0 37 ............................. GCAAATCCACTTACTTCAACAGAAACTTTAAATTTTC 555719 29 100.0 37 ............................. TTATATATCTTAGAAACTTTTTTTAATAAAGAGAAAG 555785 29 100.0 37 ............................. TAGACCAAGCATTTGCTGTTTGATTCGTTTCTGGGTC 555851 29 100.0 36 ............................. TTGAATACAGTCTCTGCAACTTGTTTAATATTGTTC 555916 29 100.0 36 ............................. ATGTAGCATCATCAGCAGGAACGGACAATAAATTTA 555981 29 100.0 36 ............................. CCTTTTGCACCTTACACTCTTATAAGACAAATAAGG 556046 29 100.0 37 ............................. CAGATTACTGAAGATATAAAAAATTCTAAAGATGGTG 556112 29 100.0 38 ............................. TCACTTATGCCTTTTGCTGCTCCTGTTATTCCGTCAAG 556179 29 100.0 38 ............................. AAAATCCAAGTCCATATGCGTTTTCCCTTCTTTCATTG 556246 29 100.0 36 ............................. TCTAAAAACTTAACTTCACATGGAAAATCAGATTCA 556311 29 100.0 36 ............................. CAGATAATAAAAGCTAGGGGTGGCAATACTTTGTGG 556376 29 100.0 36 ............................. CTGTAATCGGGTGAAGCATCAGCTTTAATTAATCTA 556441 29 100.0 37 ............................. AAGATTCTGTTTACATTGAATAGAAAAAACTGTTCGT 556507 29 100.0 36 ............................. AGTTGCATAGAAGAGTATCTATTGGATATCATAACC 556572 29 100.0 38 ............................. ATAGTTATCCACTCATCATTTTGCAATCTTCCTCTTAT 556639 29 100.0 37 ............................. GATTTAATGTATGAGGCATTTATAAAAAGTTCATTTC 556705 29 100.0 36 ............................. ACATGCGACACGTTTGGTAATGAACGCCAATTCATT 556770 29 100.0 37 ............................. ATATATGTATAAGCTACACCCACTTTTTCAGCTGATG 556836 29 96.6 37 ..........C.................. GCTGCTAACAGCGCAAAAGTACCTTGTAGAGTAAATA 556902 29 93.1 37 ..........C.G................ TTTAATATTTTTTGATAATACTCTTCAATGTATGTCA 556968 29 89.7 0 ..........C............GC.... | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.1 37 GTTTAAATTAGACTAAGTTAGTTATAAAT # Left flank : GGGTCTGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACAATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTCGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATAAAAATATTTTATTGGGAATTTGTTATAATTTATATCGACTACAAGTTTTATATGTTACAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGATAGTGATGGCAAGGTTTATAACTACGTTTTTGTTTTTAGCTAAAAACACTACTGGTGGCTCACTGCAAATTACCTATTATAATAGCACTACAAGTGTTGGAATCACTATAGTTTTATTTGGG # Right flank : TAAATTAGATATATAAAATTATGTATAAGCTATATTGTTATGAGTACAAATAATATTTCTCTATTCATTAAAAAACTTAACTGAGAGTTTAATTTATATTATTGAATTAGAAAGAATTTTGGAAAGTAGAAAATTATACCCCAATGATACCCCAATTACAAAAATAAATAATGAAAAACATTGAAAAAAATTAGTCCAACATCATAACTAAATAGCTATATACCTACACTTACAAAAATCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTATCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAATAATCTAAATAAAAATACAATACTAGGAGAGGTCATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAATATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTAGACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 772423-774814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000001.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 772423 29 100.0 36 ............................. TTATGAAAGTTAAACTTTAAATCTCTTTTTTCTTTT 772488 29 100.0 38 ............................. AGCATTGTAAGTGGCATAGTTACATACATTCCTAAACT 772555 29 100.0 37 ............................. CTAGCAGGATAAGCACCACCAAACCAACCACCGCCAC 772621 29 100.0 37 ............................. TAGATTTAGTCATATACTTAAAAACTTCATAATAAGA 772687 29 100.0 36 ............................. TTTTTCTATTCCACCAAAAAAACCACCAATGCCATT 772752 29 100.0 37 ............................. ATGATTTTAACTATTTCGGTGTCCTCTTTTAAAGACT 772818 29 100.0 36 ............................. TTTATCCTTCTAATTTTAAATTTTAGAATTTTAAAA 772883 29 100.0 36 ............................. ACGCTAACGCAAATAATTCTCCTAGCTGATGTATTA 772948 29 100.0 36 ............................. CGCCTTTTATGTGAATCAAGAATTTTTTGATTAAGT 773013 29 100.0 38 ............................. AAATTTGTAATATTATATAATCATCCTAAAACAAAAGG 773080 29 100.0 36 ............................. ATAATGTATTAGTGAGTAGAGTAAAAACAAATTTCA 773145 29 100.0 36 ............................. CGAAGAGTTTTTTAATACTTCTTTTTCTTTTTCCAT 773210 29 100.0 37 ............................. AATTTTCTATGTTGAGTATAAAAATTTATCCAACCTA 773276 29 100.0 37 ............................. TTTGCAGGGGGGAGGCAAAGTTTTGATTGGGGTGGTA 773342 29 100.0 37 ............................. TTTTTGTTATAGCCATGTGTAGCGTATGTACCCGAAC 773408 29 100.0 36 ............................. TCAATTATGTAATGAAATTGATGAAGATAAAATTGA 773473 29 100.0 37 ............................. TTTTTTAATAAGCTATGACCTACTGATAAACATATTT 773539 29 100.0 37 ............................. AATTTATTAGCTAAAATTCTTCTGTTATTAAAGCTAG 773605 29 100.0 37 ............................. CCTGTAGCACCTTTTATTATATTCTGCACTGAACCAC 773671 29 100.0 36 ............................. TTGTAAAATCAGCGTTATTTTTTTATGATGGATATA 773736 29 100.0 37 ............................. TAACCTCTTTTGTTAGTCCATGAACTTTTGCCTTTTC 773802 29 100.0 37 ............................. TGTAAAGAGAAAAAAACAAAACTTTAAAATTTTCATA 773868 29 100.0 37 ............................. AAAGTAAACCCATGCACAACATAATTTTTAAATAAAT 773934 29 100.0 37 ............................. ACATATACATGCAAGGTAGTTTCTTTTTTTAATGTAA 774000 29 100.0 38 ............................. AGATTTAAAAAAACAGGTACTAAACAACCTGCTCTCAC 774067 29 100.0 37 ............................. TTTAGATACGCAGAAGAAGAAATTATAAGTTTAAATG 774133 29 100.0 37 ............................. GTGGGATTTTAAAGTATGCAAATAAAGGTCTTTCAAT 774199 29 100.0 36 ............................. GGGAGCGCAAGCAGGGCTAAATCAAAATGACGACAT 774264 29 100.0 36 ............................. ACGAAAATTAGAACTACCATATTTACTGTAAACTAT 774329 29 100.0 37 ............................. TTGGTTGTCCGTTGCCTGTGCCATTTATAATAATATT 774395 29 100.0 38 ............................. GACATAAAAAACACCCATAATGGAAATCGCAATTGGAG 774462 29 100.0 34 ............................. CTTGATAATATTTCAGCATATGATACTGAAGATG 774525 29 100.0 37 ............................. TTGCCAATGTAACATCTTTAGATATTACAGTATCATT 774591 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGATACAGTGTCAG 774657 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATTAATGAGTATTTAGAAACTT 774722 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 774786 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 37 29 98.4 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACACAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATATATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TAAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAGTAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAACTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 91701-91861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000003.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 91701 29 100.0 37 ............................. TTACTAAACATCTTATAACTTCTCTGAGAGCCTCTAG 91767 29 100.0 37 ............................. AGAGGCAACTAATTGCTTATGAGTCTGCTAGTCTTAA 91833 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 98.9 38 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATACAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGGAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGCTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGATAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATCAATTGCAATATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGA # Right flank : ATTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAAAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4948-4193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000005.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 4947 29 100.0 37 ............................. TTTATCAAAAGTATCTGGTACACTATCTAACATTCTT 4881 29 100.0 38 ............................. TTAATTAACTTTTCATTATTTTTATTTATGTTGCCTTC 4814 29 100.0 37 ............................. TATAAATTTCATTATTTTTAATTCAGCTTGAGGTATC 4748 29 100.0 37 ............................. TCTTGCTTTTCTATAACTTCAACTTTCCCGTTAGAAG 4682 29 100.0 36 ............................. TCTATCTTTGAATAATAAGACTTAGATATGCCTATT 4617 29 100.0 37 ............................. TTTTTCAAATCTGATATATCGACCTTAAATTTCGTGG 4551 29 100.0 37 ............................. TCTTCAACAGTTGTGTTACCATCTCCTACACGCACAG 4485 29 100.0 37 ............................. TGCTACGTAACCAGTTTCACCGCTTTCAGTATATAAC 4419 29 100.0 37 ............................. TGTTGGTATAGTTTCAGAAAAGAAATTCGAAACACTT 4353 29 96.6 37 ..................T.......... TTGTACAATTAGATTAAACGCTTCTTTTCCGCTTATT 4287 29 100.0 37 ............................. TATAAGCTATCTCATTGAGTGAATCAGCTATAATCTG 4221 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCTATTTTATCTCTAAATATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18519-18879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000004.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18519 29 100.0 37 ............................. CCTCATTTTTATGTTTTTTTCTGCACCCGCAACCATG 18585 29 100.0 37 ............................. TTTCTATAAGAATTAACAGACTCTATTTTTACCACAT 18651 29 100.0 38 ............................. ACGCTTCCTACTTTTGAAGTTCATAAAGATGATTTAAA 18718 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 18784 29 100.0 38 ............................. CCGTCTTTTGTTGCTTTACATAAATTTATATTACTTAT 18851 29 89.7 0 .................CA........G. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 97.7 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAGAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGT # Right flank : TTTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCCTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTAATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATTTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGGATATCTTTTTTATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 98330-98687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000004.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 98330 29 100.0 37 ............................. GAAATAGCGAGAATTATTGTGTCTATAGGAGCGGTAG 98396 29 100.0 36 ............................. TTGTAGCAGTTGATTTATTTGCATTAGCTTGTGTTG 98461 29 96.6 37 A............................ GATGATTCATCTAAAAAAGATGCAAAGACAGAGCAAA 98527 29 100.0 36 ............................. TTTATTTTACTTGTAATTCCTCCAAGTATACCACTT 98592 29 96.6 38 ...............A............. CAGATGAACGTAATAAGTTCGCTGAAATGGAAGCTAAA 98659 29 86.2 0 .....................C.AA...T | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 96.6 37 GTATTATATTAACTATGTGGTATGTAAAG # Left flank : GGAGGTACAAAGTCACTAGAAAACTTTCATCAAGAGTCCACAGATATTGAGGATTCTAAATCAAGTGATAATATACAACAAGATGCCTAGTGAGATATTAAGAATTAAAGATGAATATACTTCTTTTTGTTTCGATGAAGCTTGTATGTTTTTAGTAGATGCTATAAAAAATGATAAAAAGCTTAAATTTGAAAATAATGAAAAGAAAACTATAGATAAAAATGAGAGAAAAACTTTTGTCCAAATAGCATTAGAGAAAAAGAAAAAAGTTAATAGGTAAAATATTCTAAATGAATAGAATAAATTAATGTTAATTTATGATATAATGATAATATAGATATTTTGCAGTGTACGATTTTTTATATACATTGGATGTAATCATTGAAATTACTACGATATAAGCATATTTTGTAATATATCAAAAACATTACTGGTTACTCACTGCAATTTTAATATGGTTTTATATGTGTAAGAACTGGAAATGCTTAATTTATTTTGGG # Right flank : TTGAATAAACGCACAAAACACCTACTTAAACATATAGGTGTTTTTAGTGTAAATATTTTTAAATAATTGGATAAATTTTCTAAATCAATAGACTAAATTATTAATTTTAGATAGAATTATATTTGAATAAATAATTTAATAGGGGAGATTATATTATGAAATTAACAAAAAAAGTATTAGTTTTGAGCATAATAGCATGTTTTTCTGTAATGATGTTTATGACGGGATGTACTAGTTCACCAGAACCTAAAATGGAGGAAGTAGGTCAAGAAGTACCAAAGGAAGAAGAGGAAGAAGTATCAACAGAAGATAAGGTTGACCTAAATAAATTTAATCCAGATGAACTTCTAGATTATCAGATGAATGAATTTAAAAAGAGTTGGAAGACGCTACAGGGAATAGAGAAAAGTGCAAAAGAAGGAGAAATAACTAGTGATAACTTAAAAACGGGAGCTGATTTATATGAAGCTCGTTTTAGGGATTTATGTGAAGAAGGCGAG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 237378-238997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000004.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 237378 29 100.0 37 ............................. TCCTGCAAGTGCCAAGTATGTTAAACCATCTGCTGCG 237444 29 100.0 36 ............................. TTCATTCGAAGGTGATTTCTGAAAACTTTCGCCCTT 237509 29 100.0 36 ............................. CCAATTCTACATAATAAGTCTCCTGCTTTCCACTTG 237574 29 100.0 40 ............................. CCAGTTGTCATGACTACATTATCAAAATAATATTCAGAAG 237643 29 100.0 38 ............................. TAAAAACGATTAAACCAAAAAACATCAATCTGATTAAA 237710 29 100.0 38 ............................. ATGTATTAACCTGTATGACACATTTTTCCTCATCTTGA 237777 29 100.0 37 ............................. TTATTTAACAACATAATTTTACGTCCTGCATTACTAT 237843 29 100.0 38 ............................. AAAAGTCAAACAGAAAAAGAAAAGATAAATGAGATAGA 237910 29 100.0 38 ............................. AGACTAAATAAATCTGTTTTATAAAAAGCGTTTAATTG 237977 29 100.0 37 ............................. TTTGCTTTAGCTTCTGCGTTTCCTGTCGCTGACTCGA 238043 29 100.0 36 ............................. CAACTTTTAGTCTTTCATCAAGCGCTTTTATTTGTA 238108 29 100.0 37 ............................. ACATAACCAAAACTCTCAAAATCAATACCTTTAATTT 238174 29 100.0 37 ............................. TTATCCGCAGTTGCGGAAATAGGAAAAACAACAGAAA 238240 29 100.0 37 ............................. TAATTGCATCAAGACCAGGATGGGAGATATGGCGACG 238306 29 100.0 36 ............................. ACATATGTCGCTTCATCAGCAGGAACAGATAACAGG 238371 29 100.0 38 ............................. AGCTATAAAACTATATCAGCAAAATGTGGATGTAGTGA 238438 29 100.0 36 ............................. AGTGAATGTGACCAATTTTGTGACGAATTATCAGAG 238503 29 100.0 38 ............................. TGGTTAAATCTCCAACAGAACATTTATCTAAATTACAA 238570 29 100.0 39 ............................. TAGAAAATAACGTCAGTAGTATTAGCAGGTAAATCTAAA 238638 29 96.6 37 ...............T............. AACACTTTAAAAACTAATGTATTCAGTATAAGAGATT 238704 29 96.6 37 ...............T............. CTTGTTAATGCAAATAAACAACATAGCACTATTAATA 238770 29 93.1 38 ...............T.C........... AGGGTTTCTGATAAAATCTTCAAACATGTAAAATATGT 238837 29 93.1 37 ...............T.A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 238903 29 86.2 37 .C.............TA......A..... TGCAATTTTTATTCGTTGTCCAATCTCTTTGAAATTT 238969 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 25 29 98.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAACTTTTTTATCCATATCGTTTAAAAGATGAGAATATCTATTTATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGATATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTGTGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTCCTTTAAAATATAATTATTTTTTAGCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATACATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTATTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAAATTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92243-90894 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000007.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 92242 29 100.0 36 ............................. TTACTTGACAAACAGTTACTAAAAATAGAAAGGTGA 92177 29 100.0 37 ............................. AAGGACTCTCCATATAAATTAGCCATTAAAGAACTAT 92111 29 100.0 37 ............................. CTAAGTATATTAATTTCTCCTTGCGTTTCTATATCAC 92045 29 100.0 36 ............................. GTTAGTTTTATATATTGTCTCTGTACCCATAGGATT 91980 29 100.0 36 ............................. TACCAATACGTTACAGCAGTAAAGACAGAAATTGGA 91915 29 100.0 37 ............................. AGAAGGACGAGTTTTAGCATTCCAAGAACGCGGGTCA 91849 29 100.0 37 ............................. ATACACAATTCAGACAAATATAATAAATTAGTTGCTA 91783 29 100.0 37 ............................. ACTTTTTTTAAAAAGTAAGTGCTTTTTATTTAAATCT 91717 29 100.0 37 ............................. CTCTTATTCTTTCAAATTTTCTTTTACATCTTTCTGT 91651 29 100.0 37 ............................. CTACTTCCACCACTTTGAGAAGTTCCAACACTTCCAA 91585 29 100.0 37 ............................. TTTGGATACAAAATAAAAGACAAACATTTAGTGATTA 91519 29 100.0 37 ............................. GTGATTTTGCTTACACTTAATAGAAAAAACAGTTCGC 91453 29 100.0 39 ............................. CATATGGATTTGTAGTTATATTAGTTAAGTTAGATACTT 91385 29 100.0 38 ............................. TTTTACGAAATTGTTATCTAATGTAATGATTAATACTA 91318 29 100.0 38 ............................. TTTTTTCCGATACTCTATTAGAAATTTTTTTCAAACTT 91251 29 100.0 37 ............................. ATTCTTTTTGAGTGAAGTTTAATTCTTTTCTAAGTGT 91185 29 100.0 36 ............................. TATAAAATTATGGAAATGCAAACAGGATATAACAGG 91120 29 100.0 38 ............................. GATACTGAAATGGAAATGAATATAGAAAAATACTGGGC 91053 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 90988 29 93.1 37 .............C.........A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 90922 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 21 29 98.2 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAGTAAATTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTATTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGCATGTGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGCATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 65382-64491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAADAI010000008.1 Clostridioides difficile strain lsh33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 65381 29 100.0 37 ............................. TTACCAGCCAGAGAGAAATTTTTAGCTCGCTGGTACA 65315 29 100.0 37 ............................. TCAGCATATTCTTCTAGTTCTCCAGCGTCCAGTTTGG 65249 29 100.0 37 ............................. AAAGAGGTGATGTCTAGTTTTAGCTTTGAAACGTATG 65183 29 100.0 37 ............................. TATAATTTATTAGCTTGTTTCAATAATTCTAATTGAT 65117 29 100.0 36 ............................. TCACTAACAGGAACATCAAAAGGAGGTTTAAAATCT 65052 29 100.0 37 ............................. GAAGTTAGAAGAGGAACACACTTACTTTTAACTTTCA 64986 29 100.0 37 ............................. GAATAAAAATAAATCAAAGTTACTACCCCCCAATAAA 64920 29 100.0 37 ............................. ACACTTGAAAATTTATTTTGCAATTCCTTTAAAAAAT 64854 29 100.0 40 ............................. ACTTTAGTTGCAGCTGCAAATGCACCACCAACTCCAGCAG 64785 29 96.6 36 ............................A ATCGAATTGAAATATTTATTAGCAGGAGCAAGTTTT 64720 29 100.0 37 ............................. ATGGATGCAGTTTTAGGTGATGCTTATATGGTTCAAG 64654 29 100.0 37 ............................. GTAAAAATGGTTTCTTTTAAGGAATCTTTTATGAAAA 64588 29 100.0 40 ............................. CCATATTGGGATATAGTAAAATTTTCAGGAAATGTATATG 64519 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 14 29 99.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATTAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCGAAAGCAGCAAGCATGTCAGCGGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATCGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTCAAACTATTTTCAGATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTCTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //