Array 1 192887-192521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZQA010000005.1 Streptococcus gordonii strain SK9 Sgordonii_SK9_DanaHsu_Sia_YES_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 192886 36 100.0 30 .................................... TTACCGTCTGTATCTTTGACAAAACCTTCG 192820 36 100.0 30 .................................... ATTTGATATTCCGTTCTTTAACGCCTGCGG 192754 36 100.0 30 .................................... ATAGACCACATATGCACATAACTGGCATTG 192688 36 100.0 30 .................................... ATAGCACTCTTTATCCTACAGCCTTCCGAC 192622 36 100.0 30 .................................... GATTGGTCGCAAGCAGATGAAGATTCTGGA 192556 36 80.6 0 .........................G.G.AATT..G | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : AACTGTACAACCTGATAACGCTGAGCTGATTGCTAAGTCA # Right flank : TTTTTCTTTACGAATCTATCCAAAAAAACCACCTATTAGGTGGTTTTTTCAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGTTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATTAAAGAGGTCAATGGTCGATTCACCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATTAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATATCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGTGTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1268-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZQA010000006.1 Streptococcus gordonii strain SK9 Sgordonii_SK9_DanaHsu_Sia_YES_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1267 36 100.0 30 .................................... TGGAGAAGTTGCCGTCAGTATCAGATGTTG 1201 36 100.0 30 .................................... TGCTTGCACCCACCATTGAACGGGCCTTGT 1135 36 100.0 30 .................................... TGTAATTAAGCACCCCTTTGTTTATAGCGG 1069 36 100.0 30 .................................... GAAGCTTTAGGTGTAAGTCCAAGTACAATT 1003 36 100.0 30 .................................... ACTTACTCGCTTGGTTTGAGATTAAGGAAG 937 36 100.0 31 .................................... TCCCAAAGCCATTATCAATCCTGAAGATTTG 870 36 100.0 30 .................................... CAGCCTGATTTGTGTGATTTACAATGCCCA 804 36 100.0 31 .................................... AAAGCTATGAACGATGTTATAGCTACTACTA 737 36 100.0 30 .................................... ACCTATCCAAGCCGAGATGATGATGAGACT 671 36 100.0 30 .................................... CGCCTGTACCAGACCATATCCGAATACCTG 605 36 100.0 30 .................................... GGACTCGCTAGAGAACAGGCAGAAAGCTAT 539 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 473 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 407 36 100.0 30 .................................... CTTAAAATCTACTATTCTCTCCCCGGAAGT 341 36 100.0 30 .................................... CAGGTTTGCGAGTCAGTGATATCCTCACAC 275 36 97.2 30 .............................A...... GGACTCGCTAGAGAACAGGCAGAAAGCTAT 209 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 143 36 100.0 30 .................................... CTGATAACGCTGAGCTGATTGCTAAGTCAA 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATCTATCCTACAGTGAATTTGTTAAGTGTTGCGAAAAAATGGAACTTCTTACTAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATATCCACGTCACTAAAGAGGTGTTAGAGGAAATCAATATTGTCTCAGATTATGTGGATCATTTTTATTCGTTAGAATTTATGTATGATCGCTTTACTAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCAGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTGGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGGAGCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGTGATGTAAGGATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : CTTGATAACGCTGAGCTGATTGCTAAGTCAAGTTTTTGTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //