Array 1 231739-233646 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIY01000003.1 Methylobacter tundripaludum strain OWC-G53F Ga0139037_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 231739 36 88.9 37 ..G......G......A.T................. AGGAGTTGAATCTGTTATTGCAGCGCTTAAGAAATTT 231812 35 97.2 35 .............-...................... CCTCTCATGAGTGCTTCGCAGCGCGTACCGGCTCT 231882 36 100.0 36 .................................... ACACGGATTATGACGGGGACAACAACAAAGCAATAA 231954 36 100.0 35 .................................... AACCCATGTTTTTGCGAGTTTCTTTTAGTCGCTCG 232025 36 100.0 37 .................................... GAGCGTGTTAGCCTGGGATTGGGATCATGGCCAGCTT 232098 36 100.0 34 .................................... TGACCGACTACCTCGAACTCTACAAACGCTTGGC 232168 36 100.0 36 .................................... GGGAACGCTTGGCGTTGCGTTTTCCGCGCGACAAAA 232240 36 100.0 38 .................................... GGCACGGTCGGCGACCCGATACCACTAGGCTACGAGTT 232314 36 100.0 37 .................................... TGCACCGTCCCATCCACGCACAACGCGATGCTTAGGA 232387 36 100.0 36 .................................... CGCAGCCGAGCTGAGCAAGCGAATGATGGCGGTCAA 232459 36 100.0 36 .................................... CCTGCTTAATAGGCAGTTCTTCTTGCTAGATGACGT 232531 36 100.0 38 .................................... GATTGTTGACGCAAAAATTCAGCCTGAATTTCAGAAAA 232605 36 100.0 36 .................................... GGTCGCTCAAGCCGAGCTGTTCCAGGACATGCAAGA 232677 36 100.0 36 .................................... TCACACGTTTTTAATTTTTAAAATCCATTCTCCGAT 232749 36 100.0 36 .................................... TTGGTCGATTGTTCGGCGCCGATTTTTTCATCCCGG 232821 36 100.0 35 .................................... GACACAGCAGACGACCGGCCAACCACACCCGTATT 232892 36 100.0 37 .................................... AGCACCGCCATTTTCACAAAAGTTTCCCAGGTTGACT 232965 36 100.0 35 .................................... TCCCTGGCGCATGTGGATATAAACGCGTTAATGTC 233036 36 100.0 35 .................................... TACACGCTATCGGTATGAAAGTCGGAGGCGGTGCC 233107 36 100.0 36 .................................... CAAAACTAAAGATATAGTTAATGTTTTTAAATGTCG 233179 36 100.0 36 .................................... AAGTGCCAGATTTGAAAGGGGAAAAGCTCTTTAAGT 233251 36 100.0 36 .................................... GCCGCACGCGCGGCTGCATTACGGCTGATCCGTATT 233323 36 100.0 37 .................................... CCCACGAGCAGAGAACTTAATTAGGTCATCGATTGTT 233396 36 100.0 36 .................................... CTTGGTTCTGTGATAGCCAAATGGATGTTTTAACTG 233468 36 100.0 36 .................................... CAAGTGCTATCGCTTGTTAAGTTAGCGAGTGACAGT 233540 36 100.0 35 .................................... CCGCTGAGGCGCTGGATAAGTGGGAGCCGCGCATA 233611 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 27 36 99.5 36 GCTTCAATGAGGCTCCGGCTATATGCCGGAGAATGC # Left flank : TTTTTTAGCCGCGTGGTCGGTGTGCAGAATGACCGGTACGCCGTAAGCTTCAGCCACGTTGTGTACGTGTTTGGCGCCCGAGATAGCACCCAGGATAGCCGCTTGCTGGCCTTCCGCTTTCAAGCCTTTACCGGCTACGAACGCCGCGCCGCCATTGGAAAACTGGACAACGATAGCCGATTTTACTTTCGCGGCCGCTTCCAACGCTGCATTAATCGAATCAGTGTTAATGACATTTACCGCCGGCAATGCAAAGTGGTTTTCTTTGCATATCGCAAAGATTTTTTGCACGTCATCGCCAGTGACAACACCGGGTTTTACTACATCTGAAATTTTCTGAGACATTAAGGGTTCCTGTTTCAATCTGTTACGTTGAGGGTGATCAAGCCGAGAGCCATTGCGGTTGCGGAAAATATCCGCCGCCCAATGCTGCCAGCCGCGTATTATAAAGTGTGTTCATGTAATAGGCTACTCTTGCCAACCAGGTGATCCAGGCCGTG # Right flank : CAGCCCGCTCTGGAGGCCTTGATTTGCCTGGCCTGCGCGGGCTGTTTGCGAGAGCTGCTTTACAGCGCCTTGCAACTGTACACAAAAAACCGCCTGCCGAATAGCCGTTTTTCATAACATACTGATTTTTAAAGAGCCATCCGTCTGCGAACGCTGACGCCATTTTGCGCGCCACTACAGCGCTCGTCAACCGGCGGCAGACAATCCGCATCAGACGATCACCGGCTGGCGTTCCTGCACTTCAAACGACTTGCCTAAACTCACCACCGACGGCTTGACGGTTTCCGCAGGACCGATATTCATGATCAAAATATGATCTTCGCTGTGATGAATGATGCCGTCCAGCAAGGCGATCAGTTCGGCATGGCGTTTGCGGCTTAACCGGCATTGAAACACCGACAGTTGCAGCCAGTCGCCGTAGCCTTTCATCAGCCGAAACACCCGCCGCCAGCGTTTAGCGTCGTGAATGTCGTAAGTGACGATGTAAAGATGTTCGTAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCTCCGGCTATATGCCGGAGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.40,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 308158-311190 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTIY01000005.1 Methylobacter tundripaludum strain OWC-G53F Ga0139037_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 308158 28 100.0 32 ............................ TTCCGGTTATGCCGCCATTTATATCTGCATAC 308218 28 100.0 32 ............................ AGTGAGGATATGTCCGGCAACAGCAACTCGAC 308278 28 100.0 32 ............................ AAGCACACCATCCTCTGGGCGGTCAATCGTCG 308338 28 100.0 32 ............................ GGTAACGTATATATCTGACCAGGCAGGTTTCC 308398 28 100.0 32 ............................ AATACGACGCCCTGATTCATCTCGCCGCTGGG 308458 28 100.0 32 ............................ ACCCGCTGCCTCGTTGCGGCTGCCAGTTACCA 308518 28 100.0 32 ............................ CTTTGAGCGTAACCGGATGACCGGAAACATTG 308578 28 100.0 32 ............................ TTATCCGGCTGAGCACATTACTTTCCGCAGCC 308638 28 100.0 32 ............................ GGCGATCCAACGGCACCGACTCCGTCGCTATT 308698 28 100.0 32 ............................ AGTTGAACTTTTCGCTGTTCAGTCCCAGTTTC 308758 28 100.0 32 ............................ TAACGAGTCGGTCAAGGCGAACCGCTGACCGC 308818 28 100.0 32 ............................ ACGATCATAAAGCGATTCCTGGGCAATTTCGT 308878 28 100.0 32 ............................ AAGGCCACTAATGCAGCAGCTTTTCCTAAATT 308938 28 100.0 32 ............................ ACGCTTAAGCGCCCGGATAAAATGCGGTTTCC 308998 28 100.0 32 ............................ ATCCATGATCCCAAAAAACAGCAAACGATTTA 309058 28 100.0 32 ............................ AATCCAGGTACGGGTGCGGGTCGGGCTGTTCT 309118 28 100.0 32 ............................ TAGTGTCGAGGTCAACGATCGGACGGTAATGA 309178 28 100.0 32 ............................ GCCTCGCGGCCTGCTTGCACAAGTCCAGAAAA 309238 28 100.0 32 ............................ TAATAGTTCTGGCGGAAGATGAAATAGGCGTT 309298 28 100.0 32 ............................ AAGAGCAATATTCGCAGTTCGCGGAGTGTTGG 309358 28 100.0 32 ............................ ATCTTACGTCCGGCTGATTATGTGTTGGCCGA 309418 28 100.0 33 ............................ ATCTTACGTCCGGCTGATTATGTGTTGGCCGAA 309479 28 100.0 33 ............................ TTTAAATTCAATCTCGACCTCTCCGCTTTCGTT 309540 28 100.0 32 ............................ ACCAATGTTGAATGAGAATCTAACCCGTCCAA 309600 28 100.0 32 ............................ AGTATTGACTATTTCATATCGCACAGGAAGCG 309660 28 100.0 32 ............................ TGTCGTATGGTTGGGCTTCTGAGTTTACAACT 309720 28 100.0 32 ............................ ATCAATGACTTATTGTTGGCATAGGTATCAGT 309780 28 100.0 32 ............................ AGCGAGCGACGATCTTCAACCGCATCGACAAT 309840 28 100.0 32 ............................ ATTGCCGCACAGGTAAACCCAGTGTTTACAGC 309900 28 100.0 32 ............................ TAGTTGTCCAGTTACCAGCGAGCGACGATCTT 309960 28 100.0 32 ............................ ATTACCTATCGTCACGCAACTTCGCAGAATCA 310020 28 100.0 32 ............................ CGTTATTTTAGATGTGTCGGCATCAGAATAAT 310080 28 100.0 32 ............................ TCAACCATTCGGTTAGTTTCAAACACTGAAAT 310140 28 100.0 32 ............................ AAGTGAATAGTCAAATCGCCACTTTAAGATTA 310200 28 100.0 32 ............................ AATTAGGCGCTATTGGCGGCGCTGTTGCGGCT 310260 28 100.0 32 ............................ TAAACTCAGCCGAATTGCCGTTTAGATTAAGC 310320 28 100.0 32 ............................ TGTGCATTTTGAACGGCGATATCGAGATAGCC 310380 28 100.0 32 ............................ AGCATCTAGCCATTCTTGATACTCCGTATTAT 310440 28 100.0 32 ............................ GTGCGTTGTAGATCCTCAGAATTACGGGCAAT 310500 28 100.0 32 ............................ ATGCGTAGTAGACCCAGCTAATGCTGGGCAAT 310560 28 100.0 32 ............................ TATCAAAAAATGGCTGCATTACGGATAGATGG 310620 28 100.0 33 ............................ GAAAGGGACGGACCCAGAGAACTTTTTTTATTT 310681 28 100.0 33 ............................ ATATAATCCTGAAACTGGAAATGGAACCTGTAA 310742 28 100.0 32 ............................ CTACATGCTCGAAAACCCTGTGAGCAACATTT 310802 28 100.0 32 ............................ TTCCGACCGCATCTACTGAGAGCCTCCATTTT 310862 28 100.0 32 ............................ TAAACCCTTCGGAGACAGCGCGGGGGCGGGAT 310922 28 100.0 33 ............................ GTAGGCGGCGATATTGCGCCCGACTGTTTTAAA 310983 28 100.0 32 ............................ AGTTTAGATTGCCTAGCCGCTTCAATTCAGCC 311043 28 100.0 32 ............................ TAAAAACCAAAATGGTAGCGCCGGGGAAAATT 311103 28 100.0 32 ............................ ATCACGGGCGCTTTTTTGTCGTCGTCCTTGTC 311163 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCTTGAACGCTTTAACGCAAGCCGCTGGCTGAACCGCCTGAGCGACTCTGTGCACCTGACCGGCATACGCAACGTCCCCGGCCGCATCCAAACCCATGCCTGTTATTACCGGATTCAGCCTAAAAGCAGCAACGCCAGAATGGCAAGGCGCAAGGCCAAGCGGGAAAACATCGGCATTGAACAAGCGCTGGCCGCACTCGAAAGCTGCCCGGAGCAACGTAGCGATGCGCCTTTTGTATGGATTAAAAGCCTAAGCAGCGGGGAAAGGTTTCGTTTGTTTATAGGCTATGTCGAAGCGCCGGAACCAATCAACGCAGGTTTTAACGCTTATGGCTTAAGCCGGCAAAGCAGCGTTCCTGTTTTTTGACCATCGGTAGGTCAGGCTCTTTAAAAACACATTTAAATCAGTCGATTAGCTTGGGCGTGTTTTTCAATGGTAAAAACGGAAAAATACGCCTAAGCTGTTGATGCATTTGTTTTATCACGGATAAATCTGCT # Right flank : AATAAATATTAAAAACTGATGTTACGCACAGATAGTTTTTGTCTTGTTTGTCGCGCTGCATGGATGGAGTGCATGAAAGCACTCAATTCGCGGCAATTGCTCCATGCATTGCTCTACCTCCTGCATCCTGCAGTCGTGAATCCCGGCAATCCATGCCGGGATGACGTATTTTTAAAGACTTGTGTATAACGACGAGCGTAGCGCGCGGAAACAAGAAAAATGGCAAGCCAATGCATTGGGAGCAAATAAGCCGCTGGTTTTATTCAGGCTTATTTAAAGCATCTGAAAAATCGATCAACCAAGCGTCCTGAAAATAGTGGGTTATAAGATAAGCGACCAGGTTTACCCACTGTACACCCCCGTCCAGTATCGCCGAATCGGAGGTAATCGCAATGTTACGGCTGCTCCGAATGGCCTGGTCCGGGTTTTCAATTAACTCCGCCCGCCAGTTCCAGCTATGAATCTTGGCAATGTCCCGAACCATCTCCGCAAGCCGCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //