Array 1 68470-70014 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039845.1 Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 68470 29 96.6 32 ......................A...... TGCTGAGTGTGGCGGCTGGGGTGGGATTCGAA 68531 29 100.0 32 ............................. GGAATGCACCCGGAGGACATTAAGGCCGCACT 68592 29 100.0 32 ............................. GCGTGGCACGACAAACGGGACGGAGGGCATCG 68653 29 96.6 32 .............G............... CTATCACCGAAATGCTCGCCAATCCTGCTGTC 68714 29 89.7 32 ..A.....A............G....... TCAAAATCCCGTCTGTATCGGATGGGGCGCGC 68775 29 96.6 31 ............C................ CGGCAAGGCTTATGTGGAGGCTGGGGGATTC 68835 29 82.8 32 ............CGG.T....G....... GCTGTTGCTGGAGGCGCCACAATCAACGACTG 68896 29 89.7 32 ............AT.A............. ATGATTATTGGCTGGCTGTTTTTGTTCCATTA 68957 28 75.9 32 T..A.....-..CG...A..C........ TCGGTGCAGCACCAGCACGACCGCCGTAGGCC 69017 29 89.7 32 A............G.A............. GTATCGACATAACTATCGAAGCAGAGGATTCA 69078 28 79.3 93 .........-...G..AT...C..T.... AAGCCTGGAGACGGCAAACAGCCAGTAAAATATCCTTAACCTGCATGTAGGGGTTTAACCGCTCCTTTAATAGGAGCCCCACGCTTTATACTT 69199 29 93.1 32 .............G.......G....... CAACAATTATGCTTTGCTGACAGAACATGGAA 69260 29 79.3 31 ....C....T.CCG.......A....... TGAGGATCTGGGTAGATAGTTCGGAGCGACG 69320 28 82.8 33 T...........-.GAG............ ACGACAAAACAAGGATATGTGGCCATCTGTTGC 69381 29 86.2 32 ............CG....A.........C AATTGCTTAGAGCATATTTGGCTGTTCTCGAA 69442 29 86.2 32 A............G.......G......T GCTTGATTAACGTACCGGATGTCATTTTATCA 69503 27 86.2 32 .......T.C..--............... GATAATCGAAGCGTTCCACAACCAAGAGAAAC 69562 29 86.2 32 T............G..........TG... AAAATATGACCGCCTCGTCGTTTTGATCATTG 69623 29 89.7 32 ....A......A.G............... TTCAGTCTTTTCCGCAGAAAGAAGTCACCCCT 69684 29 86.2 91 ...........T.GG.........G.... GATTTCCTTTGCTCTAGTGCAAGGAAGCAGAAGGGGTCCCCAGGAATGGGGGTTAACCTGCTAGTGTTGTCTGGACAATTTTTTCCTCAAG 69804 28 75.9 32 A..-......TA.G.......G......A TAAAAAGGGAAAATCGTTTGAACACGCAGAAG 69864 29 86.2 93 T........T..C...............C TTAGCGGAATGCGTGGACAATGCATTGTTCACGACTTCCCCCGTGTGTGGGGGATAGCCATTCAGAGCGAGAGGAATGTATTTCTGTTTCATC 69986 29 82.8 0 AA.....T.......T............A | ========== ====== ====== ====== ============================= ============================================================================================= ================== 23 29 87.7 40 GTCTTCCCCGCGTCTGCGGGGTTTAACCG # Left flank : TGGCGGCCCATTTAGATAGAAGTCATGGTGGGGTATAGCCAAGCGGTAAGGCATCGGATTTTGATTCCGTGACCGGAGGTTCGAATCCTCCTACCCCAGCCATTCCTATCCATTGGTTGGCGCTGGTAGCTCAGTTGGTCAGAGCGGGCCGCTCATAACGGCTTGGTCGGGGGTTCAAGTCCCTCCCGGCGCACCAATCTTTCCTTTTTAAAAGGCCATCCATAGCCTCATATCCAGAAAAAGGCTTTTAAGCCTGTACGAAGACATTCTCTTCAATGGTTAATCCTGTTCCCTATCTAGATATGAATTGGCCTTTTGAAAGCGGCATTACATAAAAAACAAGCCTTTGCCGTTGATCTATTTTATCTAGCTGTCTATCAATAAGCCTTCAAATCTTGAATTGGTTTCATCTAGCAGAATGCTATTTCTCGCCATTCGTGATTTCTCCGTAGATCTTTGACAACAAAATAATGCTTTGGAACCAAACTCTTCCAGAAAGA # Right flank : ACTCCTGTCCGAATTCTGTTAGCATGCTGCGGCCTATTCCCCTCGTCTGCATGGGGTTAACAGTGATCAAAATCAAAGATAAATGTTAAAGGGAGGTCTTCCCCCGCTTGTCAGGGGTTTTACCTGAGGATGGCCCAAATCTTGAGCCAAGCACGCCGTATCCTCCTCTTGTTGGGGATCAACCGAAAACCTGATATCAAACTCTGATTAGCAATAAGTCTTCCCTGTGTATGCGGGGTTTAACCTTAAGACGATATCCTGATGTAACTTTAGATCCCATATTCCTCGCGTGTGCGGGGTTTAACCGGAGGTAATTGATCCAACTCTGATGATGTTAATGCCTTCCCCGCGTATGCAGGGTTAAGCCTCCGTTGTTCACATGACACAAAACAACACGGCCTTTTCCCCGCATGTTCGGGGGTTATCCGCGCCATTCTATGGAGGCAGGGTTCGCAATATCCTTCTCCCCGCGTATGCGGGGGTTAACCGTCACCACGATG # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:-0.24, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTCTGCGGGGTTTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCCGCGGGGTTAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 328717-327188 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039845.1 Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 328716 29 96.6 31 ...G......................... CTGGCGCGTAAAGATCGACACCAACACTCAG 328656 29 93.1 31 ...G........................T CTGTCAAAAATCCAAACGGACAGAGCGCAGT 328596 29 96.6 31 ...G......................... CCTCAATGCCTTGATTTTCTGCGATTTTTGG 328536 29 93.1 31 ...G........................C AGATTTTCGGAAGAAAATTGCTGAATTTCAT 328476 29 93.1 31 ...G........................C GGAGCCGGGCCGCCGGGTTCTGCGCTTCTTG 328416 29 93.1 31 ...G........................A GCTCCAAACGCTCTGACGCTGCGCCCATTTT 328356 29 93.1 31 ...G........................T AGTTTATGCAAGCTGGCTTGTATTCCGACAC 328296 29 93.1 31 ...G........................T CTTGTCACAATTCCCGTCACTGGGCTTGTCG 328236 29 96.6 31 ...G......................... GTCTGACTGTCTTGTGTACCGCCAGAAACGC 328176 29 93.1 31 ...G........................A GATTGCGCGGGTTTTGTGTCTAGCGTTCTCG 328116 29 93.1 31 ...G........................C TCGTCCATGTGCCTGGACGAACCCCCTTGCG 328056 29 100.0 31 ............................. GAACCTGATTGCCAAGACCGAACGGGGTATC 327996 29 100.0 30 ............................. GGCTTCGCCCTCTGATCCGCTCATTTTTCT 327937 29 96.6 31 ............................A CAGCGAACACAGAGACCGCCGCTTCCGCCAG 327877 29 96.6 31 ............................T TGTTACCCGTTCGGATTTATCTTTTTTCTGT 327817 29 96.6 31 ............................A GTCCTGCGCCTCTTCTAAAAGCCTCTTACGA 327757 29 100.0 31 ............................. CTCTGCGCTCGCTCCCGCACTGAAAAAAATT 327697 29 93.1 31 ...G........................A TGATTGGGAACGCTGGCATTTACCTGCGCAA 327637 29 89.7 31 ...G.........C..............A CACGAGGACGCTAATTCCGATTCAAAAAATT 327577 29 96.6 32 .............C............... TGCGCGGATCGGGAATACAACACCAGTGGAGG 327516 29 93.1 31 .............C..............T TTGCCTGATTAGGTTTTGCAAAGTCCTGGCA 327456 29 93.1 31 .............C..............A AGGGATCATTGGAAGGGGTGAAGGCCGACTA 327396 29 100.0 31 ............................. CATTCAGGCTGCACGGATTGTCTTGGACTAC 327336 29 96.6 31 ............................A CACCGGCTTCTCTCTCTAACCGCCTCAGCAG 327276 29 100.0 31 ............................. CTACAGCACGGCGACCCCGCGCCTGCCACAG 327216 29 93.1 0 T...........................C | ========== ====== ====== ====== ============================= ================================ ================== 26 29 95.4 31 CCACACCGCCGCATAGGCGGTTTAGAAAG # Left flank : AAAATCAGCTACTCCTGACGTACCTGCAAAAAGAGGCGTTCCGCCGCCGGCGCTAAACCCGATCATTACACCCGCCTTCCCAAGTTCTCGAACGGCGGCTTGCGTTATCGAAGTTCCTGGGCCGAGGAGTAACGTTGTGGTATTGGCAATCGGCACATTCCAATACAACCTCTTCTTGCCCGCATCCGTCACATACTCAACGCGCCCTCCATTCACGAGTAAGCGGCAATATTCCAAATAATAGATGTTGGCGCGTTTGGAGTACATAATGGTCTTGAGAGATGAAGGAGAAATTTCGTCCATAAGAAATATTTCCAAACAACATGCTCTTAACGTGAAAGCTCAATCCTAGCATTTTTCCACTTGATAAGACCCTTTTTTTTCGTTACCCAGAAATCTCTTAAAAACCAATGAGTTGTAAAATGCCTCAAAAAAAGGGGTAAAGGCTTATTGGATGATCTTTTGGCGGATTTCCGCCGCACATTGTGAATATTGTTCTA # Right flank : AACTTTGCAATCCCGACACCTCATCGGCTGGCTCAGCTCTTCAAGATAGCAGCACGGAATTTGTAAGTGGACTTGATGTAATTGAGAATGAGCCAGAAGGCGATAGTTTTACGCCATAGTTCCAAGGAGGGGTGAAGGCCAACTAGACAGCCACATCACCCCTCCTCTGTTCTCACTTGGAAAATATGCCTTATTGCCTTTCCCATAAGTAGACGCACTTTCGAGTTTCTGAACGACCGTGAGCCTTCATCTGTTGAGAACTATTGCCTTTTCCTACAGGTAGAACCCATATCTTGAGACACTTGAAGCCAAGTTTTTCGGCCATGCTTGAGAGGATGCAATCCACTGGAATAGTAATTCCATTGTAACGGACGTTGTCATTTACCATATAAACTTTTCCGTGGCGCTTCATAACTAATGCTAATTGATAAATATGAACTGCCATTTCAAAGAAATAGCATTCAATCATCCCTATAACCGCATTGTTATTGAGGCGGTGT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCACACCGCCGCATAGGCGGTTTAGAAAG # Alternate repeat : CCACACCGCCGCATAGGCGGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //