Array 1 266515-265247 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVB010000001.1 Campylobacter concisus isolate 2010-30800, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 266514 37 86.5 38 ....TGTT...............T............. GTTATAACTGGTAGCTCAGGCTCTTGGAACCTTATGTA A [266511] 266438 37 100.0 42 ..................................... CCTACAATCCACTCCATGTGTTCTCCTTTTATATAAAGTATT 266359 37 97.3 36 ....................C................ GCAATGAACCATAAAGGTATTGCCTTCACCATAGAT 266286 37 97.3 45 ....................C................ ACCTCTACCCTCTTCTTGTCCTGAACCATAACTGGGCAATGAGCA 266204 37 100.0 40 ..................................... ACTTTCTGCAGAACTACATTTAATAAGTTTCTCGCCTTTG 266127 37 97.3 40 ......................A.............. GTTTGCAGCGGATCATCTTTTCGTCTTTAGCGACGATGTT 266050 37 97.3 35 ......................A.............. GCTTGGTAAGTAATTGAGCACATGCTCAATCTTGT 265978 37 94.6 39 ......................A...A.......... GGACTTTTATATAGATGTGTTCTACGCCCTTTGCAGCCA 265902 37 97.3 39 ......................A.............. ACTTCTAGTGATATGTTAGCAGCTATTGCACTAGCTGCA 265826 37 97.3 38 ......................A.............. ATATCCTTAATCTCGATTTCGCATAATTCTGCGATTTC 265751 37 100.0 37 ..................................... GAAGCTAGATGCTATCCATTTTTGGTAGTCTTTTTGA 265677 37 94.6 36 ......................TT............. ATTAAATCGTATTTGAATACATTATTTAATTCATCT 265604 36 97.3 55 ......................-.............. TCTATTAGTAGCACACCAGCTTCGTTTTGATTTGTTACGTTTCTATCTGCAATGA 265513 37 100.0 39 ..................................... TTGCCTTGCTTGCGAAGACCTTTCTTCGCTAAGACTAAG 265437 37 100.0 41 ..................................... ACATAGACAAGCGCTGCATAGGCGAAAAAGTCTTTACTGCA 265359 37 97.3 38 ..........T.......................... TGAATAATTAAGCCATTTGGTAGCTTTGTATATCCGTT 265284 37 83.8 0 ....TT....................A...C.A...A | T [265249] ========== ====== ====== ====== ===================================== ======================================================= ================== 17 37 96.3 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : ACAGCTCTCATTTGCAAAGCACTCGTCGCACTTATGGGCGTGATTTATACAGCTTACGCTTTTTAGTGCATACCCAAAGGCTCCTCGCACCTGCGAGCCGATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTTACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCGCGTCCACCATACTCTTTTTTAGTCCATTTTTTCTATTTGTTTTAAGTTTGGGGATAAATTTATTAAGATCTGGTAGTTTTATCAGCTTAGTTTCATTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTGCATATTTTGTGCACCTTTATTACTCTTGGTTTTTAGCTTAAATTTCCATCTTTTTGGTTACAATTTCAAAAATTTGTGATTTTAAAGATATTTAGAATAGGTTCTTTTACTT # Right flank : AATGGTAAAGCGTAGGCGCTTTATGTTGTAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGGAATGATAGGTTTTTTGCGATTTGCGTAGATAAATAAAAGATACTTCAAATGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAGGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGTGTAAGATCTGCTTGATGATGAAGAAGACTTTGAGTAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTATTGAATTATTTTGTTTTGTTGAGAGAATTATAAAGTGACGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTGTGGCTACTTAAAAAGCTAAACCGCGGCGAGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATAAAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 268918-265852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVB010000004.1 Campylobacter concisus isolate 2010-30800, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 268917 30 100.0 37 .............................. TGATCCAGCAGATAAGCACCTTGCTCTTGAGCGCTAT 268850 30 100.0 36 .............................. TGTTCATAGTGCGAGATATAGCATTGAGGATAGCTT 268784 30 100.0 34 .............................. TCTCAAAAATCAAGGACAGCCTAAAAGCGGACTT 268720 30 100.0 36 .............................. TCCCATATAATAGCCCTTGCGGCTATCCTTGAGCCT 268654 30 100.0 37 .............................. GAAAAATCATCATCTTTGTTTGTTTCGTGAAAATTGA 268587 30 100.0 37 .............................. GGTTTATCTCACTAGCTGGTATATCTTTTGGCAATAC 268520 30 100.0 34 .............................. GAAAACTTAGCTGATTGATCTCTGCGTGGGCTTT 268456 30 100.0 37 .............................. GAGCAATCAACACATTTTCCTTGAGTTGTACCATTAA 268389 30 100.0 33 .............................. AAATAGAAAAAGCAGTCGTAACGATCCTATCAC 268326 30 100.0 36 .............................. TAATCCCAGCCGTCGGCGGTATTTCTAAGCTTGATT 268260 30 100.0 35 .............................. TTACAATGATTGTTTCATTTTTTGGCTTCTTTAAA 268195 30 100.0 38 .............................. AAGAAGTAGTCGCTAATATCGTAATTATCCCTATTTTT 268127 30 100.0 37 .............................. AATCCAGTAGTAGCAAACGAGGTATTTAATAAGCTAA 268060 30 100.0 35 .............................. TCAGTTTCAAATAAAGACATAACAACAAAATAAAA 267995 30 100.0 38 .............................. TATGCTCTTTATAAGACTGGTGCTACCGATAACGAAGT 267927 30 100.0 35 .............................. AAAGTTCGTATTCTTTAAAGCGTGGCGACGTTCTT 267862 30 100.0 38 .............................. AAGCATAAAATCAGACGTTTTACAATGTCAAAAACATT 267794 30 100.0 36 .............................. TAACCCTATTTTCTAAATCAATATCTTTCATCTTTA 267728 30 100.0 37 .............................. TTGGGTAGCCCTAGCGACGCCGAAATAATAGAACACA 267661 30 100.0 36 .............................. AATATGCCGCCTTATCATTTAGAGCCTTGGAGTAGC 267595 30 100.0 38 .............................. AACACCGCCCCGATCTTTGAGCCACTATTAGAAAACAA 267527 30 100.0 37 .............................. GCCCAAAAGTTAGACGAGCCAGCCGATGAAACCGACC 267460 30 100.0 36 .............................. CGCAAAAATGAGCGCTCGGGGATATTGTGAGCGGGG 267394 30 100.0 34 .............................. TTTGTAGTGGTAACAATAAGATTTGTATTCCACT 267330 30 100.0 36 .............................. AAGATCTAAAAAGCCTAAAAAAACATACCGAACCAG 267264 30 100.0 36 .............................. AGGACATCATTGATGATACTGAGCTTGAAGACGAGA 267198 30 100.0 37 .............................. AAGCTTTGCGATGAGCTTTTTAAAAGCGATGAAAAGC 267131 30 100.0 37 .............................. CATATTTGATCGGTAACCCTGGAAGCGGAAAAACTTA 267064 30 100.0 37 .............................. AGATATAAAGTCGTTGAAGAGTGCTTGCCTGATCCTA 266997 30 100.0 36 .............................. ACTCAGTATGCCGAAAAATATTTTGGTGAGTATTTG 266931 30 96.7 35 ....................G......... CAAAGAAGACACAATAGACGAGAAAAAGCCTATCT 266866 30 100.0 33 .............................. AAAAAAATTTTCAAAAAATGTGCGATCCTGCCG 266803 30 100.0 34 .............................. AGAGCGGAGTATAAGGAGCTAATCGCAGAGCGCG 266739 30 100.0 37 .............................. AGACGCAATATACGTTACCCCACCCTTCAATGTATGT 266672 30 100.0 36 .............................. TCAAAAAGTAAAGTAAAGTCACTATGACACTCAAAG 266606 30 100.0 37 .............................. AAAAATGGCATATATGAAAATTATCATCATTGCTTGA 266539 30 100.0 39 .............................. AAGCTCTCAAAATCTCCGCTGGTTAATTCGGCATACATA 266470 30 100.0 34 .............................. GCACTATTGACAAGTAGCCTATCTGCTCTAAATA 266406 30 100.0 37 .............................. TGATCTTTTAAACCTATAAGACGAACTTCATCGATCA 266339 30 96.7 35 ...............A.............. AGCACATATCCAAAGAAGATGTTGTATCTGCCTTG 266274 30 100.0 36 .............................. TATCGACGCATGGAACAACAATACAATTTTGCAAAT 266208 30 100.0 34 .............................. CTGATAGGCTAAAAGATATCATTGAGAGTGCTTT 266144 30 100.0 34 .............................. GTATCACGTTTAGCCCTACGCCTACTGGGCGGGC 266080 30 100.0 35 .............................. GTATAACCAGCCAAGAAACGGGGGCGTTTAGGATA 266015 30 100.0 36 .............................. AATAATATTGTCAATTTAGAAGACGCCAGAAAGACA 265949 30 100.0 38 .............................. AAAGAGGCAAGCAATGCAGTGGTTGTTTCTAATTTGGA 265881 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 47 30 99.9 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCGCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGTCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAACGCCTATAAAATAGGCTCTTTGGTGCT # Right flank : ACGAAAAACTCACCGAACTCTTAACAAATATAAAATTAGAATTTACTCCGTTGGAGTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGCTTTAAAATTCTTGCTTAATGCGAATAATTTTATAAGTAGAACATCAAAATAAAAATTTTTGTGTATTTTACCTTTGTTAAAATACTAGTTTGTAAAAACCAATCATTGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //