Array 1 173305-171780 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKU01000006.1 Akkermansia muciniphila strain GP06 scaf-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 173304 31 100.0 34 ............................... CAAAAGATACCAAAAGAATCCAAAAGAATACAAA 173239 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 173174 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 173110 31 100.0 34 ............................... CTCACAAAAATCCCTGTATGAACCGCAATCTGAT 173045 31 100.0 34 ............................... GATATCTTGCCCTGGGACGTTAAACCCGCCCTTG 172980 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 172915 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 172850 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 172785 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 172720 31 100.0 34 ............................... GTTGGCGTAAGTGAAATACCTTGCCCCCGCACCG 172655 31 100.0 34 ............................... GGCGGGGGTTAGATAGTAGCGGTGGACGAAAAAC 172590 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 172525 31 100.0 34 ............................... TGCCTCTGCGTCAGCTCATTGACGTCAAACTTAA 172460 31 100.0 34 ............................... CGGAGGGTCAGCTAGCTTCACCTGCAACGGAATC 172395 31 100.0 34 ............................... CCGCGTGATTGTTAGGCAGGACTTACAAAGTTAA 172330 31 100.0 34 ............................... CGGGGACGGGGTAGTGGACGATATTACCGCCCTT 172265 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 172201 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 172136 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 172070 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 172005 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 171940 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 171875 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 171810 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 72475-71235 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKU01000007.1 Akkermansia muciniphila strain GP06 scaf-7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 72474 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 72407 33 100.0 33 ................................. TCTTCGATGGCGCGGGCGAGAGCCCGCCATGCC 72341 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 72274 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 72208 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 72141 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 72074 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 72007 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 71940 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 71874 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 71807 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 71740 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 71670 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 71604 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 71537 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 71470 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 71403 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 71336 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [71313] 71267 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 19 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //