Array 1 458160-457866 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBP01000001.1 Listeria sp. ILCC810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 458159 30 100.0 36 .............................. CGCCTGAGCGATTGGCCGTCGTTTCGATGCACCTGT 458093 30 100.0 35 .............................. TCGTAAATATAGCTTAAATAGCGCTCCGCACTGTA 458028 30 100.0 35 .............................. GTGGCTGGGCTAAAGATAAATAGATTGCCCATGTG 457963 30 96.7 38 ..C........................... GTTGTTAGACCTGAATAGGCTACATCATCTTGAATGGA 457895 30 80.0 0 ..............CC.A....C....TG. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : TCAAGCGAAGCGGCGCCGATGTTTTCGTGACAGGAGATATTTATTATCATACAGGGCACGACTTACTTGCGATTGATTTACCTACGATTGATGCGGGGCATAATATTGAAAAAGTGATGAAACGTTATTTAAAAACGGAATTTGAAAAAAGGGCGGAAAATCTAAAGTATGAGGCTGATTTTATCATTTCAGAAGTCGATACTGATCCGTTCACGTTCTTATGAAAACGAAATTAATTTTTTAAAGCGGCAACTCAGGCAGTGGGAAAGCAACGCTCTTTCAATGTCATTAGAGTAAATTTTTAATTCAATCTGTCGATGTCTAGTAATGTGAAAATGCTGGGACATCGACAGAAATCCGGAATTCATTGCGGGAGAAGGGAAGATGGCGGAAAGAGAGACAATGACTTTCTTTTTCTACTCCATTTTTCTCCAAAAATCCGGGGGTCGACAGAAAATCACTTTTGAGCTATGATGGGAGTAAGAGTCACGAGGGTACCT # Right flank : TTAGCCAAATAAAAAGTTAAAGCACAATTAGAGCATATATTAAAACAAAACAAAAAGCATAAATCCAGTAGTGATTCCATTTCAGAAATGGTTTTTACTGGGTTTATGCTTATTTTTTATCGACCGCCGTTTTTTAAATGTTCTAATCGGGCGCGGCGTTTTTCTTCCATGTTTTTCTTTTTGGCACGCGGTAGAATGGCTTCGGCGCTTATTTGGTGGTGGCGTTCCCAAGTTGTGGGGTCATCTGGTTCGTACTGGTCTAAAAAGACGAGCACTTCTCGGATAATATGTGTTGGCGTGCTAGCACCAGCAGTTATCGCCACTTTTTTAGCATCTTTAAGCCAATCTAAATTAATTTCGCTCACATCGGCCACTCGATATGCGGGGACTAAAGCTTTTTCAATCGAAACTTGGGCGAGACGATTCGTGTTATTGCTCCGCGGGTCGCCTACAACAATTGTGACGTCAGCGCCGACAGCTTGTTCTGCAACGGCTTCTTG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 122856-122029 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBP01000004.1 Listeria sp. ILCC810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 122855 36 100.0 30 .................................... TTGGAACTATCGATGTAATTAAATTAATGC 122789 36 100.0 30 .................................... TCATGAACAGACGGGAACATATAAGGTAGC 122723 36 100.0 30 .................................... GCAACCTCTTTCGGGCAAACCGGCCAGCTC 122657 36 100.0 30 .................................... TCTAAAGTTGTTTCCCACCCGTAAAATTTA 122591 36 100.0 30 .................................... GTGATGGAGTATATATTCGCTTTAAAAGTA 122525 36 100.0 30 .................................... GATTCAGGGGAAAGCTCGGCAACGGAATCG 122459 36 100.0 30 .................................... TCGACATCATAAGAACAGATTTGTTATCTA 122393 36 100.0 30 .................................... GTACGGCGCTGGGTACACCTCTGGGTACGG 122327 36 100.0 30 .................................... AGGCTGCTGTCTTTGCGTCTTGTTTGGTCA 122261 36 100.0 30 .................................... GCGCACCTCTTAAATTTGCATAACTTAAAT 122195 36 100.0 30 .................................... GCGCACCTCTTAAATTTGCATAACTTAAAT 122129 36 100.0 30 .................................... ATTAGGATTTTCGTACTACGTCACTGGAGT 122063 35 80.6 0 ..........................-..AA.GCTG | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : TGATTAAAAATATTGATGATACGTTACGTTATAATGAATTCGAGGAAGTCATGGATCTCATAAAACAACTTACACTAAAATATTCTAATTTTTACTGCATGGTATTTCCAAGTCAAATCGGATACGTTTATGTTAGCGAAGAATACATTGATAGTATATTAGTTATGGGTGAAGAAGCACACTCATTATTTGATAGCGTTACTTTATATGAACGTGTCTGTTCTCATTATCCGGATAAAATTATGCCAACTTATCATGAATTTTTATCATGTTTAAAAATTGTTGCGCCATATTTATTTACGAGCAAAAAACAAAGTATTCGAATGAATGTTAAAGAGTTAGTTTTAATTAAATTAATCAACGAATTATTCCAATACTTTGAGTTTACTCCAGCTCCGGCAATGCTTCATAGTCAACTAGAGTATAATTTTTTGTATGAAAGCTAATAAGTTTTATGATAAGATAGAAAATATCAGTAGTTTTTAAAACCTTAATTTGAG # Right flank : ATACATTTTTTGTTCGCTTGCTATGAAACTTAATATGTGAATTATTTCACGAATGAAGAAACTTGTTTTTTTGAAAAAAATTAACTGATTTGAAGTAGGTGTGCAATCTACTTCTTTTTAGTTGTATCCAAGTTACTATGAGCTAAAGGGACTAAAGACTATCGAATGTATTTAAAATCCTGATTTTATCCAACTTTTTATTCAATAAGAACCAAAAGAACTATTTTTATCAGAAAGCTACTTTTTACTTTATTTTTTCCACATTACTCATTATATTATAGATAATCAACTAGAGAATCTGGTAGTCAGGCGAAGGAGGGGTGCATAATTCTGAAAAATTAATATCGTGTTTTTAGGCAAAGAAATTGTTCGGTCTTTGTAGATGTTAAGGGAAGCATACGCAAATTTTTATGAACAGTTGTGATAAACATAGGGGGCCCTTTCATGGATTTTCAATACTCGCCGAAGGGATACGGCGATAGGGGGAAAAATGATGGGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 128773-129734 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBP01000004.1 Listeria sp. ILCC810, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 128773 36 100.0 30 .................................... CCTTAGCTTCTTTACCTGATGAGGAAACGT 128839 36 100.0 30 .................................... CAGATTCATTTGCTAATATTTTCCATGCAG 128905 36 100.0 30 .................................... TTAGATGTGACTGTTGGCGGTGGTGCCGTA 128971 36 100.0 31 .................................... CCCAAGGCTTTTGAGTTAGAGCGTAAGAACC 129038 36 100.0 30 .................................... AACCAAGTTTATTCGAAACCGAGGCACCTG 129104 36 100.0 30 .................................... ATCAAGGTCTCGCCTCAAAATTCGGCGGTA 129170 36 100.0 30 .................................... CAGCTTCGTTTTGTTTAATTCTTTCATTTT 129236 36 100.0 30 .................................... GAGAGAATTTAGACAGTATACCACAGTAGC 129302 36 100.0 30 .................................... AAAAAGCAGTTGGCTATTCGCTCACAGGTA 129368 36 100.0 31 .................................... CTATGGGCTGGATAGATATAGAAGTGTGGGA 129435 36 100.0 30 .................................... TTCTTCCGCTATCATCAGATGTGATTTTAT 129501 36 100.0 30 .................................... AAATTCCTCATCACAATATAATGAGTACGA 129567 36 100.0 30 .................................... TCTTTTATTTGGTCTTTTACCCATTAAATA 129633 36 100.0 30 .................................... AATAACCTCGACTTCGACCTCGGTGACGTT 129699 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Left flank : ACCTTCTTCAATTACATCATCTAAATAAGAAATCCCTCGGCGTTTAGCTAAGTGCATTAGTGCAGTATAAATTTCTGATACTTCTAGTTCTTCATGTAGCCCCTTCACTCTTAACTCGTAAGGGTTTTCATTCACTTTATTACAAGTACTTATACCATTTTCCATAAGTAAATGTTTAATTCTTTCTCTTCGATGCTTTTTACGTCTAGTTAAGCGTCTAGATTGACGGTTAATTCTCCTATCTTCATTAGCTGAAGCGTCCCGACTACTAAATAATCTTACCCCAGTATCTATTACTTCCCCATTTGTAGCGTCTATAATTCCCCATCCTACTGAAGCAACACCAATATCTAGGCCTAAAACCAATTTTCTCATATGATGATCTCCTCTCACCTTGTGTACTAATCAAATTATACAATTTAGCGAATAGAAAATCCAATATATTCTGTGTTATAATAAAAATAAAGTAGTTTATAGAACCTTAAATTGACGAATTTGAG # Right flank : CTTTTGCCCATGTCTGCATCAGCGCCTAGTTGTTTTAGTACTCTCAAATCAACAAACTTACTAAATAATGGTACATTCCCAAATATCGAATTGGCGATCCTGCTTTACAAGCAAAGAATCTGGAACATAAATAAAAAATAAGCATAAACCCAGTAAAACCCATTTTAAAAGATGGTATTATTACTGGATTTATGCTTTTTTATTTTTCCTTTTATAGAGGGAAAAATCTGATTATGTCCCAAGCTCTTTTGCTTTAAGATTTTTAAAACGGCATTTTAAAATTACCAAATGGATTTTTTCCTTTTTTACCTTTTCCGCCCATGCCGCCGGACATTTGTTTCATCATTTTTTTCATTTCATTGAACTGTTTGAGGAGGCGGTTTATTTCCTGAATTGGACGGCCACTTCCTCTTGCAATTCGTTTTCTGCGACTTGCGTTAATGATATCTGGATTGTCTTTTTCCATTTTTGTCATGGATTTAATGATGGCTTCGATATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTCAGAATTTTAGCTACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 165721-166275 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBP01000004.1 Listeria sp. ILCC810, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 165721 30 100.0 36 .............................. ACTGTGAAACATGAGATAAACGGTGAGTTTAGCTTT 165787 30 100.0 36 .............................. GCTATTTTGTCTTTTGCCGAAAACCAAGAACTTTGG 165853 30 100.0 34 .............................. ATTTTCGAAGCTTGGAAGATATTAAATCGGAGTA 165917 30 100.0 36 .............................. TGCAATCTTTTACTACTTCCTCAATAACGCTTAAAG 165983 30 100.0 35 .............................. AAAGGACTGGTTTCTTGCAAAATCCCATAGACATA 166048 30 100.0 37 .............................. CTGATGAAGCGGGTAATTGGCTTGACTGGTACGCCAG 166115 30 96.7 35 .............C................ CCATCTGTAATCTCTAGGATTTGCTTGTGCGAACT 166180 30 86.7 36 ...........CA....A.........G.. TCTGTTGTGATCTTACTTTCAAACTCATTCGCCGCT 166246 30 70.0 0 ....C...T.......CA.A..T.C...TC | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 94.8 36 GTTTTAATCTATGTATTGTGAAATGTAAAT # Left flank : AAACAACGAACTGTGGTTCCACGTCAAGGATTTGCCTGGTTCGCATGTTGTGATCCAAGACCCGAATCCCGATGAAACAGCCATCGAAGAGGCCGCCATGATTGCCGCTTATTTCTCAAAAGCACGTCTATCAAGCACCGTCCCTGTTGACGCAACGCTCGTCAAGCACGTGAAAAAACCAAACGGCGCCAAACCCGGCTACGTCATTTACGATAATCAAACGACCTATTTCGTAACGCCTGACGAAGAAAAAGTCCAAGCATTAAAAAATAAATGAGCCATTGCCCCGGTATGATGTGTATCGGGGTTTTCTGTCGATGTTCGGTAACGTAAAATTGCTGGGGGAACGACAGAAAGTTGGGAATCATTGGGAGAGTAGGAGAACGAGGAGATAATGGAACAATCAATTCGTTTTTCCATCCCATTTTCCACCCAAAAATCTAGGGTCGACAGAAAACCACTTTTGAGCTATGATGAGAGTAGAGCTCGCGAGGGTACCA # Right flank : CCCATTAAAATCCCCCGCCAAAATAAAAACTCTGGTGGGGGATTTTTTATGTTTGGTTTAAACAAACGATCGGAGCTCCTTGTTTTTTGCGAATTTGTAGCTGGCAATGCTGAAAAATAGGAGTGTGTAGCCGAGTAAAATGATGATGTTTAAACTTAAATCGGCAAGTGTTCCGTTTTGTTGGAGTTTTGAGACGGCGTCCATCACCCAGTATTGCGGCATGAAAGCGGCGATTTTTTGCATGATTTCTGGCATGATAGCAATCGGGATTAGTGCGCCAGAAAGTAGCGTTGAAATCGTGAAAATCGTCGTTTGCATCGCTGAAATACTCCTTCTGCTTCCTGCGACAAAGCCGAATGCGAGTGACAGCACGACCGCCATCAGTGAGAACACCGCAAGGATTGCAAATAAATCGACGTATGCAACACCCGGATTAATCCGGAAGGCAAAACGCATTGCAAAGAGACAAATCAGCACCTCAACAAGCACAATCACATAGG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 182688-182266 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBP01000004.1 Listeria sp. ILCC810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 182687 30 100.0 37 .............................. TAAATCTTTTTAATATTTTATAACTTGCCATGTTTCA 182620 30 100.0 35 .............................. TGATTTGTTTGTCGGCATAAGCTTGTCCCTGTTGT 182555 30 100.0 36 .............................. GCGCTTCTTCTACAATTTCTTTTAAAGCTTCTATTT 182489 30 100.0 35 .............................. TTTGAAGTGTTTACTTCACATCTAGTATCAACAGC 182424 30 100.0 35 .............................. GCTGTATCTTTGATTTCAAATTGAACTCCAGACAG 182359 30 100.0 34 .............................. CCACATCAGAACGTATCTGGCCCAATTCGGCAGT 182295 30 86.7 0 .............C...G...G...G.... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTTTAATCTATGTATTATGAAATGTAAAT # Left flank : TTATCAAGGTTTTAAGATGTGGTGGTGATTTTATGTATATTATCTTAATCTATGATATTCCAAATGGCGAGGGCAGTGCGAAAGTTGCGCGTAAGATTTTTAAAACTTGTAAAAAATATTTAACACACATTCAAAAGTCCGTTTTTGAAGGGGAGGTTACACCAGCACTTCTCATGCAACTAAAGCTTGAACTTAATCAACATATTCGAAAAGAGATGGACTCTGTCATTATTTTTAATAGTCGCAATCAAAAGTGGCTAGAAAAAGAGTTTTTAGGTCTTGAAGATAGTAAGACATCTAATTTTTTCTAATCTGTCGATGCTAGATAGCGTAAAAACACCTGGGGGTCGACAAAAACTTGTTATCCGTTCTGGCAGAATGGATAACAAGTTTTTTTGTTTGTGAAACTAAGGAAAACTTGAAAAATAACTCCCGAAAATCAGAGGTCGACAGAAAAGCCTTTTTGAGGTAAGATGGGAGTAGGGCTCGCGAGGGTACCT # Right flank : ACAGGAGGCGTATTTTTAGGGTGTTCCATACATAAAGTTTTAATCCGTGCATAAAAACTACAGTTTCTGCATTTTTGTGGTATTCTAGTCTACATATTATGAAATATGGCTGCAATTTAGCATTGGGAAACTAGTTTTTTTAACTACAAAACTACACATTCTAAAAAAGCAAAAATCATTAGAAGCGCAGTGCATCTGCGGAAATGATTTTTGCTTTTATATGTGTTTGTATAGTGATTGCATATGCAATTTGTTTGCGGGGATAAAATGGGTAAAACCCGCTGTTTTTGTAATAATCCGCACTAGCTTTCTTCAAAATGAACAAAAAAGGGGATTATTTTTGCGCGATTGTTCAAAAAATGTCTACAGAAAATGGCGGTGAAGTCTGGTAAGATATTACTTGTGATGAGGAAAACACTGTATGCCTCATCATAAGTATTCCTTTAATTACAAAACGAGCTGTTCAACCTTTTGACCTAGCCATCTTATCTTGGCTAGGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTATGTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //