Array 1 370794-369569 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060636.1 Eubacterium sp. NSJ-61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 370793 33 100.0 34 ................................. AAGATTAAGTATATGGGTATGCACCAGGAGAGAG 370726 33 100.0 33 ................................. TCATCTGTAAGATATCTTATAAAGCTGTCTTGC 370660 33 97.0 34 ................................C CAATTTGATGTGCTATTGCGCAACTTTAAAGAAC 370593 33 97.0 34 ................................T CAAAAATCAATAGATCTCCATCGTTTATATTTGC 370526 33 100.0 32 ................................. CATCAAATTTTAGATTTATGGAACTTTTAGCA 370461 33 97.0 33 ................................T TAGATGTAAATGATGTACATAATTTGTTGATTG 370395 33 97.0 33 ................................G CGGAGCAACTTAACAAAATGTTTGTTGTTTCCG 370329 33 100.0 32 ................................. GCCTGTTCATTTCGCACCTCTTTTCTGTCGCC 370264 33 97.0 33 ................................T CGCATAAGCGCTTATCAAAACTACCCGCCTACC 370198 33 97.0 34 ................................T AAATGCGTCCATATAATCGTTAAATTTTTTCTTT 370131 33 100.0 34 ................................. TCGATCCCACACGCATCATAAGCAGTTTCTATAG 370064 33 97.0 34 ................................T TTGTTTTACCAATCTTTTGATATACGCTGTCTGC 369997 33 97.0 36 ................................C CCTCACTTTCGTTTTCAAATTGATCAAAAACACCGT 369928 33 100.0 32 ................................. CTTTATCGTTACCGACAAATTTACGTCCTGGT 369863 33 97.0 33 ................................G TAGCTATCTGATTTTGATGCTACGAGATCTGTT 369797 33 97.0 32 ................................G TGCAATGTATTTTAGCTATATGTATCGTATGG 369732 33 100.0 33 ................................. TTGAAGATCTACGTGATACGATGGTTGATATGA 369666 33 90.9 34 ..........G.........A...........G ATGCAGATGTCAAAGTAACGATCCATGCAAACAG 369599 31 81.8 0 ..................A.A.--.....G.C. | ========== ====== ====== ====== ================================= ==================================== ================== 19 33 97.0 33 GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Left flank : ATACGCGGTGATTTGGATGAGTATCCACCTTTTTTAGCAAGGTGATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGTAATCGATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGATGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATAATATGTAACATATTGAAAATAGTAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGTT # Right flank : TCTAACAACGCCCGCTTATTTTGGCGATATGCTCGACTTTTTTCAGAACACCAATTTAAACACTGTACAAACTAATGAATTTATATCACATTTTTATAAACAATTTTATAAACGGCAGATAATACAAAATACTATGTCTAATGTCTTTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTAATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCGATTGAAAATGCACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGAC # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 398388-399144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060636.1 Eubacterium sp. NSJ-61 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 398388 32 75.0 35 .AAC...A.T.T......C.A........... ATGGACATCCAACAATAAAACCACAAGCCATTATA 398455 32 96.9 35 .......................T........ GAACAAATAATATCACTTTCATATAGTTTTCCATT 398522 32 96.9 34 .......................T........ TGATTTACAGCCATTCTTTGATAAAGCAATAGAA 398588 32 100.0 34 ................................ TGTTTTTTTTGATGTTCAGCATTTCCATTTTTTC 398654 32 100.0 33 ................................ GGTGTAAGAACTGTATTAAAAGATCTAGGACGA 398719 32 100.0 35 ................................ CAACTAGAGTTGTAGATTTTGATAAAGCAACAAAA 398786 32 100.0 34 ................................ AAAGAAGTACGAAAATCTGTTATGAAATTAAATT 398852 32 100.0 34 ................................ AGGTCAAGGGATTTATGAGAGGAAAAGGCAATAT 398918 32 100.0 33 ................................ ATTGTCTAACATCTTACCAACGTCTGCTCCGTT 398983 32 100.0 33 ................................ TTTCAATACTAAAATTTCGGGTATTTCCATCAA 399048 32 100.0 33 ................................ GGAGATAGTAAGGAAGTTGCACAGGCATTAGAA 399113 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 97.4 34 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : GCTTGCCATTTTAAGCAACCGAAAACTTGATTCAGGTCATTGTATCCGCTATAAGAACAAGTATTTTATTCCTATAACGAAATCTGGTAGTAAAGCATATCTGAAAAAAGGTATGAATGTGATGGTGATCGAAGCATTTGATGGAAAGCTATATGCCAACATCCTAGATCATCTATTCGCTTTAGAAGAAATCCTAGAACGTGAGGCTACATCAAAGAACTTCGACACGCTCCTATCGAGGTGAAACAAAAAAAGCCTTATATTCCCCCTATGTCACATCCTTGGAAACAGGCTTCTTATCTTGCTTATGTGGCAAAGCAAAAGCACCGTCAATCCGGTGCTAATGTTTAATTATTTTTAAGACATTTTCATTTTTGCTTGACATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAAGCTAAACTTTATTTTAATTATTATATGCACAAAGCTATCTACAAAAAAT # Right flank : CCGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTTTCAACAATCTGTTCAATATTTCGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCTTTATGTCCAATACTTAAACGGATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 3 2896115-2897678 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060636.1 Eubacterium sp. NSJ-61 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2896115 33 100.0 32 ................................. ATTTGATCGATGAAATATCCACTAGTATTTAA 2896180 33 97.0 34 ................................C ATCCTCATTGTACTTGTCATACTCATCATTAATC 2896247 33 100.0 34 ................................. TCAAATGTTACTACTTCTCTTCCGCTCTCTTTAT 2896314 33 100.0 32 ................................. CAGCAGAGTACGAAAGAGGAGTACATGTAAAG 2896379 33 100.0 32 ................................. ACATCTGCATGAATTCCTTTTGATTTTACATA 2896444 33 97.0 34 ................................A CGATACGATCATAGTCATGTTTGAAGTAATAGAA 2896511 33 100.0 34 ................................. AGGTGGTATCGTTGAGGCTATCGGTACTGTGATT 2896578 33 100.0 32 ................................. TTAATCTTTGTTTCATCCTGGTGCTTTAGCTC 2896643 33 97.0 33 ................................G AGTTGATTATATGAAATTTAAACCATTGAATAT 2896709 33 97.0 34 ................................A TTATGCTCAAAGTCATGTGATCGAAGAAACAGAA 2896776 33 97.0 33 ................................G TCGTAGTAGTACAAGAACTTTGGCACATTGGTT 2896842 33 100.0 35 ................................. GTTAGATGGTCATATGGCACTGGCACGCCTTCTAT 2896910 33 97.0 32 ................................A GCACTGACTCTTTCCATAGCATCGATCGTACG 2896975 33 100.0 34 ................................. CTGGTGCATGCTCTGGCAGGTTCCTCGTTCTTTG 2897042 33 97.0 35 ................................C GTAAAATGTATTTATCTTAGTGGACAATGCCAGTG 2897110 33 100.0 33 ................................. TTAAGAAAGTGATTCCGTCAGATATCGCTAAAA 2897176 33 100.0 34 ................................. CGAAAAAAGTCATATGCCGAACGTCAATTGTCGA 2897243 33 100.0 34 ................................. AGCAAAACATTTGATTATCCTAGTTTGCCTTTAT 2897310 33 97.0 34 ................................A GTCATGGATAAAAGTCCTCAATGACGATCCTCAA 2897377 33 100.0 35 ................................. CAAGAACTTGCTGATCAATTAGTCAAAGATGGTTG 2897445 33 97.0 34 ................................A CTTTATGTTCTCCGATTGCATCATTGTTATAGCC 2897512 33 97.0 34 ................................A CTGTAACCGGCACGAATGGCTGCCTGTGTGATGT 2897579 33 100.0 34 ................................. TCCTTTCTGTGCAAATCACATTTATACCTCTACC 2897646 33 84.8 0 ..........T........C..AT........G | ========== ====== ====== ====== ================================= =================================== ================== 24 33 98.1 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : GATACGTGGTGATTTGGATGAGTATCCTTCCTTCTTAGCGAGGTGATTTTATATGCCGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACGAGACTAAGAAAGTAGCAAAAGAATTTATGAATTATTAGCATAGATTGCGAAATTCTGTTTTTAAATGTTTTATGGGTAACGTAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATTATGACAGTTTAAGATTTTATTATTTAGGTAATCAATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGGATGATATGTAACATATTGAAAATAGCGATGTTAATTTTAAAAAATATTGTTTGAAAATTCGTTACATTGGTTTGAATTTAATACATTCTTGCT # Right flank : GTACATTATGTGCTGCCTTTTAAAATTCTGTGCGTTTAGATTGATAAGAGTATTACAGTCTTTATCTAATATTTCTGTGAAAAGCAACTCCACTTGACATACTTATGATCTCATCTTCAGAAGAGGCTTTGTAATATATCATTTCTTTGAACGCTTATTGAAAAAAGTACTACTCTATTATAAATTATAAAATTGAGGCATCCTTGTGTATTATAGTTATATCACGCTTGCGTAATATGTTAGGTTTTAAAGCACATGATACTTCATACCAGCTGTAATCCATTCTTTTAAGATAATTAGATTGCTACTAAATTCAATATAAGTGTAAGCATATACCTTTGCATATTCTTTACAATTCATAAAATAACCATATCGCTCGTGAATATATAATAAAGGATTTCTAAGAAGTACTACTCACGCCGACAATAGTTGTCTTAAGCTGTATGGTCACTGTTCCAAGGGAAGGGATCGCCAATATTGTATAAATTAATGTATTACCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2957399-2958457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP060636.1 Eubacterium sp. NSJ-61 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 2957399 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 2957467 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 2957536 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 2957605 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 2957673 34 97.1 35 ...............................G.. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 2957742 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 2957809 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 2957878 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 2957948 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 2958015 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 2958083 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 2958152 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 2958220 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 2958289 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 2958356 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 2958424 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 16 34 98.2 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : GATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //