Array 1 708700-708850 **** Predicted by CRISPRDetect 2.4 *** >NC_011961.1 Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 708700 30 96.7 31 .............................G CTTCCTGCTGACGACGCTTGGCTTCCCGATA 708761 30 100.0 31 .............................. CACTCATGGTCCGCATCCTCTTCAGTCTCCA 708822 29 73.3 0 C.CA....T............-....TT.C | ========== ====== ====== ====== ============================== =============================== ================== 3 30 90.0 32 GTTGTCCCCACGCACGTGGGGGTGCACCGT # Left flank : TGCCTATCGACCAGTCATCACCGCCTCCCTGCCAGCGCCGCGTCAACCGACCGCCGTCTGCCGGCGCATGCCCCGGGAGCAGGCGGCCGGCGCCAACGGCACCGGCGCGACTCGGCCCACGAGCACCGCGCGGGCGGGCCCGCATCCGGTGGCGCCGCAGCGTGAGCGAGCTGGGTAGCCCGCCATCGCTGCTGCGCCCGGCCGACGCCTGAACGGGCAGTCCGGACGCTCTCCGCCGGCAAGCAGTCCCTCACGCAGCGACCGCCAGCGCCGCTCCCGATGGGGTGGCCAGCCGCGAACGTCCGCGGCTCCCTGCCAGTGCGGCGCGGAGCGACCCTTCGGTGACCAGCGGACGAGCCCGCCTCCGGCTGGTACAGACGTCGCCCCGCCTCGAACGGCGCGGTTCCCGGCACAACGCTGCAATACGTGATTTGCCCGTCGCGAAGCCGAAACGGGACTATCGACCCCTCGAGCCCGCGTTTTCCTCGTCGTATCATAGT # Right flank : CTCTCGCTGCTCTGCACAGCACGTCATCGACTGCGATCCCCCAGTGAGCCGATACGCCCGCGGCGGTCCGATGCAGCTCATTGATGAGAACCTGATTCAGGGCGCGATCCCTCCCGGGATACTCGTCATGACAGAGCAGGGCTCGCCACCCGCGCATCGAATCTGCTTTCCCATGCATGGGACGACTCCGCGAAGATCCCCGCGAGACGCTCGTCGTCAGCGGAACAGATCGTGTTTCGGTTTCTCGCACGATGACTACAGGGCACCACTTCCGCCACCGGTGGACGCTCCCAACAGCTCCACCCAGCCCTGGTCGTGCCGAGCCAGCCCGCACATCGAGACGACCATGATGAAGCCATCGTCCCATCACCATGGATGGTCGGGACGCTGCTCCGACGAGACGCGACTGGCTTCGTCTTGCGCGCGCCCACAGCTTGGCGGATGACAGGGTTTCCCCCTGAGCACCTCTACAGATCCGCAGGCTGTCTCCGCGATGGCCG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCACGTGGGGGTGCACCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31267-36269 **** Predicted by CRISPRDetect 2.4 *** >NC_011959.1 Thermomicrobium roseum DSM 5159, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 31267 30 100.0 38 .............................. CTGTCGGCACGACGTACACCTGCCCGGTATACACCCAG 31335 30 100.0 40 .............................. CGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGA 31405 30 100.0 36 .............................. AAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCG 31471 30 100.0 40 .............................. GTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTG 31541 30 100.0 36 .............................. CTAACTGACTAGAACAGACAATCGTGCTTCCAGCTT 31607 30 100.0 36 .............................. CTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGG 31673 30 100.0 35 .............................. CTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGAC 31738 30 100.0 35 .............................. CCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCC 31803 30 100.0 37 .............................. TTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGT 31870 30 100.0 36 .............................. CGGAATGTGCGGAACGTATGCGGAGGATTATGGCAT 31936 30 100.0 38 .............................. ACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGA 32004 30 100.0 36 .............................. GAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGT 32070 30 100.0 37 .............................. TGGATACTGACTCGCGGAACCTCAGTGTGGCACATCC 32137 30 100.0 36 .............................. TCGATCGCGATTACGAATGCACAGGCAGTTCCTCCG 32203 30 100.0 37 .............................. TTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGA 32270 30 100.0 36 .............................. AGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACAC 32336 30 100.0 36 .............................. TGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCT 32402 30 100.0 36 .............................. AGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACT 32468 30 100.0 36 .............................. ATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACG 32534 30 100.0 36 .............................. CATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCG 32600 30 100.0 36 .............................. TGACTGCGACCCACAACGGTCTCCTCACGCTGTTCG 32666 30 100.0 35 .............................. TATGGCCCGAGCTGGACGATCGCTGGTTTCTGCAC 32731 30 100.0 38 .............................. CACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGC 32799 30 100.0 37 .............................. GCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTAC 32866 30 100.0 35 .............................. CAGGCCCTCACACCACCCGTCTACAGCCCTAACCA 32931 30 100.0 35 .............................. ATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGA 32996 30 100.0 36 .............................. CGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTA 33062 30 100.0 38 .............................. CGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAA 33130 30 96.7 35 ..........G................... TCTCCACTGCACGCAACGACGTGAACGCCATTCGC 33195 30 100.0 37 .............................. TAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGC 33262 30 100.0 37 .............................. ACGGGATCGTCACGATACGTTGGTATGACGCATACGC 33329 30 100.0 36 .............................. TTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGG 33395 30 100.0 36 .............................. TGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGA 33461 30 100.0 37 .............................. CCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGC 33528 30 100.0 37 .............................. CTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTT 33595 30 100.0 35 .............................. AAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTAC 33660 30 100.0 38 .............................. TTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAG 33728 30 100.0 36 .............................. TCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGAC 33794 30 100.0 37 .............................. CGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTG 33861 30 100.0 35 .............................. CTGCGCGAACTGGATCGCATCCCAATAGCTCTTAC 33926 30 100.0 36 .............................. CTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCA 33992 30 100.0 36 .............................. GCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAA 34058 30 100.0 35 .............................. CCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCA 34123 30 100.0 36 .............................. GATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTAC 34189 30 100.0 35 .............................. AACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCC 34254 30 100.0 36 .............................. GTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTG 34320 30 100.0 36 .............................. CTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGC 34386 30 100.0 36 .............................. CTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGA 34452 30 100.0 35 .............................. GCGTGCTCTGGAGCTGATCCGGGACCTCCACGATG 34517 30 100.0 37 .............................. ACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGG 34584 30 100.0 35 .............................. CGAGGGACGCGAACCAGCGTATTATTTCCGTTGGT 34649 30 100.0 36 .............................. CCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGA 34715 30 100.0 36 .............................. GTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGG 34781 30 100.0 36 .............................. GAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGA 34847 30 100.0 36 .............................. CGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCT 34913 30 96.7 35 .....C........................ TTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGAT 34978 30 100.0 36 .............................. TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG 35044 30 100.0 36 .............................. TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG 35110 30 100.0 38 .............................. GCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAG 35178 30 100.0 35 .............................. GCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGC 35243 30 100.0 36 .............................. ACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCAC 35309 30 100.0 37 .............................. GATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCG 35376 30 100.0 37 .............................. CGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACG 35443 30 100.0 39 .............................. TTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAG 35512 30 100.0 37 .............................. CAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGG 35579 30 96.7 36 ...........................G.. CTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCG 35645 30 100.0 37 .............................. CTGCGCGTCTTCGTAGGTCAACATGTAGTCGGTATAT 35712 30 100.0 37 .............................. AGGACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGG 35779 30 100.0 36 .............................. TCACAGGCGATCACCGCCACCTCGATGCCGAGCTGG 35845 30 100.0 36 .............................. TCGTTCCTCGCGGTACGACCGACGGTACCGGGCCGG 35911 30 100.0 37 .............................. AGACATGACTCGTACTGCGTACTGCTCCCCTGGGTGC 35978 30 100.0 36 .............................. CAACGAGGGCGAGCGCGACGCGAGCGACGTCGCGTG 36044 30 100.0 36 .............................. CGGCGTACGGGGCACGGGTCGCAGCGATCGTCGCGG 36110 30 100.0 34 .............................. GCAGCTCGGGGCAGATTCACTGCCCAGCTTGCCC 36174 30 100.0 36 .............................. GGAGTCAGGGGGCCAGGTTCCAGGCCCTAGAGCCCA 36240 30 80.0 0 ..C...G...C....C...C.....A.... | ========== ====== ====== ====== ============================== ======================================== ================== 76 30 99.6 36 GTTTCGACAGTACCTATGAGGGCTTGAAAC # Left flank : CGGTCGGGTGCATCTGTCGGATACTGGCCACCGCACACTCGGAGCGGATGGGACTGGCGACCTCGATCGTCATGAGCTGCGACCGGTGAATGCTAACCCCCACCTCCACGACAGGAGACGGCGGTCGAGGTGGGCACACTTCCGATGAATGTTGGCCCCGCCACATCGAAGACGGCTTTCCACCTCGTCGGTCGCCTCGCGGCGTTGAGCGCGCCATTTGACGAGGCGGCGCTGAGGTTGACACCTATGCGCCAGGCCACGTTGAGCGCGCCATTTGGTCCCCCAGACCGAAGACGGCTTGATATCTGGACAGGATTGCGCGAGCATCGAGATCGTCGACCCCCGGTCGAGCAAAAAACGCGGGGGGTCGACGACAACGGTGCACTGCCTGATATCCGTGTTCCACCGCGGCAAAGCTCTTCCGGGGCTGGCTTGATCCAACGCTCCGAGGTCGCTATACTGCCGGTGAGAGTTTCGCGTCCCGGTGCGCCCCGCCTTGG # Right flank : CGCTCGGCCCCAGGGAACTCGCTTGCGGGTGGCCCGTTACGGCAGGATCGCTCAGAGCTCGAGACCGGCGCCAGCGAGCTTGCCGAGAGCAGGTCGTGAGTACCCCCGAAAGTTTCAAATCAGCGCTCTCGAGTCCTCGACGTCCTTGCCGGGCCAACCGGCACGGCCTGGATCTGCCGTTGTGGCGGTCGGTGCGGGCGCTCGTAACGGTCCTCCCCGGGCGCGAGGCGGTCGCGTGTTCGCGCAAGGAGGACCCGGAGGGCGGGACCAGCGACCGCGCGGCGGGCGCGCTGCCATGCGGCGTCGGTTGGGAGACGGTGGCGAGAGGCTCCGCGCGGGACCCGGCGCAGCCGGTGATACGCCTGAAGGCAGCGCGTTCCAGGGTTCGACGCCAGCTTGTGCTCTTCGAGACCAGCGTCATCTCCCTGCCAGGAGATGCCAGCATTGGCGCGGTCGACCGAGCGGGGACGCAGCAGGTTGACGAGCGCGAGCACCGCACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCGACAGTACCTATGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //