Array 1 4477762-4475230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007505.1 Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4477761 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 4477700 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 4477639 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 4477578 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 4477517 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 4477456 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 4477395 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 4477334 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 4477273 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 4477212 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 4477151 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 4477090 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 4477029 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 4476968 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 4476907 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 4476846 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 4476785 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 4476724 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 4476663 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 4476602 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 4476541 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 4476480 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 4476419 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 4476358 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 4476297 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 4476236 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 4476175 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 4476114 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 4476053 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 4475992 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 4475931 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 4475870 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 4475809 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 4475748 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 4475687 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 4475626 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 4475565 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 4475504 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 4475443 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 4475382 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 4475320 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 4475259 29 96.6 0 ............T................ | A [4475232] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4495816-4494385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007505.1 Salmonella enterica subsp. enterica serovar Tennessee str. TXSC_TXSC08-19 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4495815 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 4495754 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 4495693 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 4495632 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 4495571 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 4495510 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 4495449 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 4495388 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 4495327 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 4495266 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 4495205 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 4495144 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 4495083 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 4495022 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 4494961 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 4494900 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 4494839 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 4494778 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 4494717 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 4494656 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 4494595 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 4494534 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 4494473 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 4494412 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //