Array 1 619-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_QORC01000407.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 618 28 100.0 32 ............................ ACAACCCTGAAGCAACTCAACCTGGACTACCT 558 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 498 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 438 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 378 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 318 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 258 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 198 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 138 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 78 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AAGACCATCACACCGGTGACGCTGCACATCGTCGTTCACTGCCGTGTAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52-799 **** Predicted by CRISPRDetect 2.4 *** >NZ_QORC01000173.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 112 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 172 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 232 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 292 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 352 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 412 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 472 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 532 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 592 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 652 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 712 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 772 28 75.0 0 ...................A..GTCTCT | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTGTAGGCAGCTAAGAAAGCATAAAAGTGCCAACGTCGACTTTGTAGCGTG # Right flank : TATACACATCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9533-8665 **** Predicted by CRISPRDetect 2.4 *** >NZ_QORC01000197.1 Pseudomonas aeruginosa strain I1-408 408_07_S41_R1_001_contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9532 28 100.0 32 ............................ TGCACTCGACGGATAGCCGCTCCCATGCTGTT 9472 28 100.0 32 ............................ AAGCGGTGTTTCCTGCCTGGACAGCGGTATTC 9412 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 9352 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 9292 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 9232 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 9172 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 9112 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 9052 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 8992 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 8932 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 8872 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 8812 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 8752 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 8692 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //