Array 1 232558-234415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBH010000001.1 Streptococcus mutans strain 1001095IJ_161003_G6 NODE_1_length_353372_cov_29.377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 232558 28 100.0 33 ............................ TGCGGTTCAGCAAGTTATCTGTGGTTTTTTGGA 232619 28 100.0 33 ............................ CTGTAGCAATTGAGGGCAAACGCAGTGACTTGC 232680 28 100.0 33 ............................ TATATTAGACATGGTCAAAGCGCCTGAAACACC 232741 28 100.0 33 ............................ TGGAGCTTAGTAGCCCGACGACCCGCAAACTCA 232802 28 100.0 33 ............................ CAGGTCGTAAACTAATGGTTGCTGTTACTTATA 232863 28 100.0 33 ............................ CGGCATTAGTGATGGCTTTAATGCTATCTTTAA 232924 28 100.0 33 ............................ TAAACCAATTAAAATAAATGTAATGGTTAAACA 232985 28 100.0 33 ............................ TGCCAGTTGATCCAACAACGTTAGGATAGAAAG 233046 28 100.0 33 ............................ TGGTTGTGACCGTTTTAAAAACAAAGAAAATGA 233107 28 100.0 33 ............................ TGACTGAAGATGAATTTGAAAACAACTAGAAGG 233168 28 100.0 33 ............................ TTGCATTTTTGATAAATATTTCCGCAGCTTTTA 233229 28 100.0 33 ............................ CTTGAAAAAGTCTTTGACAATATTCTTGATCCA 233290 28 100.0 33 ............................ TTGGTGAAGGCGGTCTACAAGAAAAAGTAGATA 233351 28 100.0 33 ............................ CAGCTGTACGCGCTTATTTGCTGTGTGTGCTTT 233412 28 100.0 33 ............................ TAATTGATGAGGCGTACAAACAAAAACTCACAA 233473 28 100.0 33 ............................ TATTCATCTATAACCATAATCTCATCAGTGATA 233534 28 100.0 33 ............................ CGAGTAACAGAACCTTCAACAAATATTTTTTGC 233595 28 100.0 33 ............................ TAACCTGTTTCAATCAAATCAGAATTATTCATC 233656 28 100.0 33 ............................ TACACACGCTCTTACCTCTGTATGCTAGTGTAG 233717 28 100.0 33 ............................ TGGTTTGAAGAAAACTTTTGGGAAATTAGCAGC 233778 28 100.0 33 ............................ TAGACTCAAATATCAGACTTTGGTCTTGCTCGA 233839 28 100.0 33 ............................ CGATTGACTACATGATTAGCTATTCTGTTCCAA 233900 28 100.0 33 ............................ TAGATAAAGTTAGAGCCATCAGCCACGTCTGAA 233961 28 100.0 33 ............................ ACGTGCTCCATAAACTCAAGCGGTACAGTCCAG 234022 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 234083 28 100.0 33 ............................ CGCAAACGGAAGTCCGCACGCGCAAAATGAAAG 234144 28 100.0 33 ............................ CACTGTATTTCCAACCCGAACGCCAACACCCGT 234205 28 100.0 33 ............................ TACGGCATGCAATGCGTAGATATAGATACAGAC 234266 28 100.0 33 ............................ TAAAATTATCTCATTGTTTCTTTGATGATGTGA 234327 28 100.0 33 ............................ TGGATCCAAAATGGATCCACAGGTAAGGTTAGG 234388 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGTCCCTCTCAATTGGAAGAGTTTAATTATCTTGTGAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 329900-330134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPBH010000001.1 Streptococcus mutans strain 1001095IJ_161003_G6 NODE_1_length_353372_cov_29.377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 329900 36 88.9 30 A.....TT.................A.......... CATGCAATTACATATTCAACTAAGGGGCCA AC [329905] 329968 36 100.0 29 .................................... AGCATTCAAAGCATTTTTAAGTGCACTTA 330033 36 100.0 30 .................................... TACTGTTGCGGTATTAAAAAGGTACTGTTG 330099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TAAGGTTTTGGATGCCCAATACAAAGCAATCAAAAAACAACCAATACCTTTTGAAAAAGCTTTAGACAATATCTTTGGAAAAGATTTAGGTATCGAAACAACCGATCCGCTGGATGCACTATTGAAGTAGAAACACTAAATTAATAAGAAAGAGCCAAACCTCGAAAGTTTGGCTCTTTCTTATTGACTAAATCATGGTTAATGTAAACTTACATTTGGGTTAATTTTTTATTAATGCTCAAATATCACTGAATATTTAGGCATTTTCAATATGGAATCAAACTTGAGAAGCAACTGTCAGTCAATTTTATAGTAGAAATAAGGATGAACACATTAATTTGCTTTCTGAAATGAAAAAATACAGAAATATTTCTATATTTTTTCATTTATATTGTTAAAATATTTCGCAGATAGTGGTATAATAGAAACGCTTACAGTAAAGCAAATAAAAAAGCACCGAATCGGTGCGCACTTTTTCAAGTTGAATACGGATAAACCTT # Right flank : CAATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAACCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //