Array 1 45834-44279 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCL01000017.1 Escherichia coli strain MOD1-EC6129 MOD1-EC6129_17_length_115210_cov_44.9711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45833 29 100.0 32 ............................. ATTGCACAAAAAGCAATCAATGCGAAACGCAG 45772 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 45711 29 100.0 33 ............................. GCGCAATTAGATGACGCAGGACCAGGAGAATGC 45649 29 100.0 32 ............................. TGTATTTAAACGAGCGCGGCAAGCCACAAATT 45588 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 45527 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 45466 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 45405 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 45344 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 45283 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 45222 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 45161 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 45100 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 45039 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 44978 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 44917 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 44856 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 44795 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 44734 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 44673 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 44612 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 44551 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 44490 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 44429 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 44368 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 44307 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72111-71533 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMCL01000017.1 Escherichia coli strain MOD1-EC6129 MOD1-EC6129_17_length_115210_cov_44.9711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72110 29 100.0 32 ............................. TGCTGGTGGGTGGCACTCCCTGCCAGGCGTTC 72049 29 100.0 32 ............................. TAACAATAGATTTTGAGGAAGTTCTATGTTAA 71988 29 100.0 32 ............................. CCTTTTCATTCCATTCATCTTGCGTCATATCG 71927 29 100.0 32 ............................. CGCCAGTGGGGTAGCCGTGAGGATTTGACCTG 71866 29 100.0 32 ............................. ACTACTCAAATCACTATTTCTGATATCGCCAT 71805 29 100.0 32 ............................. CGTTGGGTATTCCATCCCGTTCACCGTAATAA 71744 29 100.0 32 ............................. TGCGGCCAGCATCGCCATTTCTGACAACAGCA 71683 29 100.0 32 ............................. CCATTCAGCACAACGCAGGTCATCAGCGTTTC 71622 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 71561 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //