Array 1 6337-5377 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACTIF010000003.1 Listeria innocua strain FSL W9-1179 NODE_3_length_492603_cov_91.183929, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      6336	    36	 100.0	    30	....................................	TGAGACGCCCCGCCCACCTGCCTGTTCGAC 	
      6270	    36	 100.0	    30	....................................	TGGTAAACAAGGCGGAAATGCAAATGCTGA 	
      6204	    36	 100.0	    30	....................................	GAAGGCTGTTATTGAACTGGCGACTACTTT 	
      6138	    36	 100.0	    30	....................................	AGGCGACACAAGCGTTAACACAGGACTCGA 	
      6072	    36	 100.0	    30	....................................	AAAAATATCAGCGCCGACAATGTTCTGGCT 	
      6006	    36	 100.0	    30	....................................	ATATTCATTCACCCATTCATATGGATTGCG 	
      5940	    36	 100.0	    30	....................................	ATTCAGTTAACAACTCAATTCCATAAAATA 	
      5874	    36	 100.0	    30	....................................	ACAACAATAAGCTAACAGGGGAAAACAACA 	
      5808	    36	 100.0	    30	....................................	TCTTGACACAGATTACTTATTAACTACGTT 	
      5742	    36	 100.0	    31	....................................	CCGCGGCAATCTCGGCTATTTTTGGAAGTCA	
      5675	    36	 100.0	    30	....................................	AATTAAGACAAGATTCAAGCTATATTGTAG 	
      5609	    36	 100.0	    30	....................................	CGTGATCGTATCACGTAAAAACAACGTAGG 	
      5543	    36	 100.0	    30	....................................	TCTGAGCTTTACGAAAACGATGGTCAACTT 	
      5477	    36	 100.0	    30	....................................	ACAAGTGGAAACATTAGTATCTATGCAATA 	
      5411	    35	  86.1	     0	..............C.....C....A....-...C.	|                              	
==========	======	======	======	====================================	===============================	==================
        15	    36	  99.1	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                               	       

# Left flank :   TGATAAGCTGACTGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTAGAAAAAAAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG
# Right flank :  ACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACAAATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACACACGAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGTTTGAACTTTGAAGAAAACGTTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTTCAAGTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCGATACTCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTACCTTTGACGAATAAAACAGAATTAACCATAGAAAATTTAACCCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.50,-1.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//