Array 1 26776-27104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXOS010000029.1 Nocardia gamkensis strain DSM 44956 W9743_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 26776 37 91.9 36 G.....C...............A.............. AATCACGGGCGAGACGTCCGGACCGGTCAGGTGCCG 26849 37 100.0 33 ..................................... ACCTACGAAGCCGAAGCGTGGAATGCCATCCGC 26919 37 78.4 35 GA..A...G.G...TCA.................... TGGGACATGGTGGAGATCACCGAGCACTACGGGCA 26991 37 91.9 39 G...............G.......T............ TGGCCGTCGCTGCAGCGGGAAGTGTCGTGGGTCAACACC 27067 36 83.8 0 G...........A.T............A.....-..G | G,A [27097,27099] ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 89.2 36 ATGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Left flank : TGATCGACCAGATCGTGACGAATCCCCGCCGTATTCTCACTGTGCGCCCACAAACCCGACGACAAACCTCCCCCTCATATCCAGAGCAAATTCGGCACAGGCAGCGACCGTACGCCAAGGGGCCGACAACCCGTGGCGCATCACAGGATTAGGGACAGCAGCATGCTGCCGCCCCCGTTCCGAACTACATCGAACGATCTTCACCCTCGCGGCGCTGATCATGAGCGCGAAGGAAGTCGACGCCGAGACGGCGATCCCACTGACCGTCCTGCTCGGGTCCGGGATCGTGACGTGCATAATGACTCCGACCAACCGAAAGACCGATACCAGCGACGGATCGACAGGACCCGCGCACGGGTTTGCGCGTCGGAGGCAAAAACCTCCAATGCACAGAGATTCCCAGGGAGGTTCCGAACCGGCGAACAGCAGTTATCAACTTCAACACACTCGAAGCAGTGCCTGCGCGCGGCCCCAGTCGACATCCGCCCAGCTCACGCACC # Right flank : GCCGACGCGTCCATGACTCAGCTCAAGGCGGAGCACCACATGGCCAAGCGGACGGCAAGAGTGCTCCGGGAGGCCGGAGCGACGATCCGGCCCAGAGGTGGACGACAGCTATAGGTGACACCCGGCTCGAACTATCCACTACGCCACGACTGGTAGCTACTGACGAAAACAATCAAGGCGCTGCACGGCCTGCGCCGACTAAGCCAAAGCTCGAGGCGGCGTTCGAGGATGGCATTGGCGAATTCGATTGCCAGCCTGGCCTCTTCGCGGCTGGCGTGGGTATACGCCGACCATGACAATGCGCGGTTAGGGTCCTCGGCGGCGCGGATGTTCCAGCACCCACACCGTCGTATCCACCGACCACACCGGGAACAGGTCCCTCGACAAGCGAATGACCGCGCGCATCGCGCCCCGGTCACCAACTCCTTGCGGACCGACTGTTCATGTTCATCCGATGACGCCGCCGCCGATACCGGCATCAGCACCGCTGCCCGCCGATG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGGTCGCCCTCACGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 288532-288261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXOS010000009.1 Nocardia gamkensis strain DSM 44956 W9743_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 288531 29 93.1 32 ..............T..........G... GTGCTGCGGATCTTCAAGGCGGGCAAGGAGAA 288470 29 93.1 32 .................A.......G... CGAGTTGCACGCCCGCGGTGATGAGGTCCGAT 288409 29 100.0 31 ............................. CGCGAAATCGACCTGCTGCCCATGTCGATTC 288349 28 93.1 32 ........-................T... GCGACGTGCTCGCCGTCGTCGAAGACGGTGTG 288289 29 75.9 0 ..............G......GATGAG.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.0 32 GTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : TCTGCATCGACAAGTCCCTTCCGTCATCGGCTGATGAGTTGATTCGAGTGGCGGTGGCCGTGGTCTGCACTGGTCAGCGCTGTGAACGGGTGTTCGACTGGTGAGGGGGTGAAGCGATGGTCGCGGGCCCGGCCCGTCAGCCCGAACCCCGCAGCATGTGCCGCCTCGACCTGCCGGCCCTGCGCCGAAATGGCGGCGCGTACAGGGGGTGGCCATCGGATCGGCCCAGGGCTGGCGGCACTAGGCGCAGGCCGGTCCCGGTGACGCATCTGACCTCAGTTAGCCGGACGGAAAAGATCCGGGGGGGCAGGTCTAGCGCACACCAAGGGGCCGCCCTTCGTAGGGTCAATCGCCCGCATTAGACGCGGGAGATGACCGGTGACGCGGTCACAGATACACATCTCCTGGCCAATAATTCGCCAGGTGACGGGTCACCAGGAACGTGTATGTTTACGTATTGAAACGTACCCATCCGGCTAGGAAGTCGCTGGTCAACAAGT # Right flank : AGGTCCGGCGGACCGGGCAAGGGCGAAGCGGTGTGCTCCCGCGTCTGCGGGGATGAGCCCTCGAAAAGGCGCTGGCGTCCAGCGCGGACGTGGTGCTCCCTGCACACGCGGGATGAGCGCGGAGCGCTGAGCGACCAAGTGATTGTGGGTGGTGGCCATGAGGACGCTGGGCAGAGCCACTGCCTTCCCTGTCAGTGCGGCGTTAGCGACCTCACGCCCGCCGTGCCTGCCGAACACGTCCCGGATCTCCTCGCGTTCGCGCAAACCGCCGACCATATTGTTGAAACCGCTCTGCAGTTCCCCCCGTTCGGTGCCGTCGTAGACGGCGAGCTCTAGATCGAATTCGCCCTTCTCCACCTCGCGCATCGCCCGGCGCACACCATTGATCGGGGCGACGATCGCGGCCAGCGTCTGCGTCATCAGCAGCAAGCCGATCAGCAGGGACGCACCGCCCAGCGACAGCACGCCCACTGCCAACCGGGCCGTGCTCACATCGTCGG # Questionable array : NO Score: 3.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //