Array 1 854-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPD01000021.1 Erwinia amylovora Ea644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 853 29 100.0 32 ............................. GTTTACGAGCAGGTAAGGCGAGAATACAAGGC 792 29 100.0 32 ............................. TAAGAACCTTGATATTAAAACCCCCGCCAGAC 731 29 100.0 32 ............................. AGGGCTGGGCTAACGCGGCATTGCACAAAGTA 670 29 100.0 32 ............................. ATTGCACCGCTGAGTATCGCAGGATGGCGTTT 609 29 100.0 32 ............................. ATGGATTACTTCCCCATCAACTTCTCTAGCGA 548 29 100.0 32 ............................. TTAATGGCTGCGAACCGCTAAAGGTTTTCACG 487 29 100.0 32 ............................. TGGTTTCTGCCACTACCCACCCCACCCTATCT 426 29 100.0 32 ............................. ATTGACTTTATAGCCTCTGTATGATATGCGGC 365 29 100.0 32 ............................. TCCGGCAAACTCCAGCAGTTCGCGGACGTTGA 304 29 100.0 32 ............................. GGAGCAATCTATGAATGCAGAGCAGCTAAAAG 243 29 100.0 32 ............................. AAACCACGGAAAGCATCAATCCCCTACGAAGC 182 29 100.0 32 ............................. ACGGCGCAGACGGTGCGCCAATAATCAGGCTA 121 29 100.0 32 ............................. TAACAGGAAAACCCATGGCAGAAACATTTACA 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATTAGTCAGATAGTTTTAGA # Right flank : GTTACTCGTCGTCAGCAGGTAAGCGGCCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 302765-302377 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPD01000005.1 Erwinia amylovora Ea644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 302764 28 89.3 31 ......C...........G........T TTACGTTTGCGTTAACAGTAAGCTCTGCAAC 302705 28 100.0 32 ............................ GGCTAAATGCCTGAATTCAACGTTCTACAAAA 302645 28 92.9 32 ......C...........G......... ATCGCACCCCACTGATTGAAGAGCAGCACACT 302585 28 92.9 32 ......C.................T... GAGCAATATATTCGATAGACGCTGATTTGCGT 302525 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 302465 28 100.0 33 ............................ GCCAACGTTCACTGTCATTTAGCCACGCTTCGG 302404 28 75.0 0 .....A........G....TT...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGCGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCACCAGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGATTGGCGTTATAGGATGGTTGTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTAAATGCGATAAGCCAGTTAGCGTAGTAATGTAACG # Right flank : TGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCATCACGGGCTTCTCATCCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGTTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAATCGCGGGTTTTTCACGGTTTTTTTACAATAAATAAAGAAAGATCTTATTTTTTTCTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTAAAATTTTTTTGCTCAATAATTTCCAGAACTTTCATTTTGAGTTGGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGAATTTAATGAAATGCAAA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACCGCCGTACAGGCGGCTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 314390-312229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPD01000005.1 Erwinia amylovora Ea644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 314389 29 100.0 32 ............................. TTCATTAGTCATTGTATATGCCTTTTTGGGTT 314328 29 100.0 32 ............................. TCTCCTGGCATGATGTGACCATTGGGCGTGTT 314267 29 100.0 32 ............................. TTGGCGGGATTTACTATGAAGTTGGCGCGGAC 314206 29 100.0 32 ............................. GAGGCAGCAATGAACAACATTGCCCAGCAGCG 314145 29 100.0 32 ............................. CTTTCAAATTAACCCCGGTTACTGGTCAGAAA 314084 29 100.0 31 ............................. ATTTATGAATATTATTTTCGGTTCGACACTT 314024 29 100.0 32 ............................. GAAGAGTTCCCCGATCAGGACGTGACAATCAA 313963 29 100.0 32 ............................. ATGAAGTTCAAATACAAAAAAAGCGGCTTATC 313902 29 100.0 32 ............................. GCCATGCCGGTAATCATGATACTGATATGCGT 313841 29 100.0 32 ............................. GGATCGGATTCGGTTTGGAGGCGCATTGCGGT 313780 29 100.0 32 ............................. CTGCCTGCTCTGTGGAATAATCCAGAGCGTCC 313719 29 100.0 32 ............................. TAGATGGTCCTTTATATGCCACAGTCAGAGTA 313658 29 100.0 32 ............................. CATGCGCAAGACCAGGCTAATGCATCCCAGCA 313597 29 100.0 32 ............................. ATTCTGGAATCAATAAATCAGATCCACGACTT 313536 29 100.0 32 ............................. ACAGGTGCTCTAAACACACGTCCGGGTGCCGG 313475 29 100.0 32 ............................. CAGTAATTGCTGCGGGGCTGAAAATGAAAAGG 313414 29 100.0 32 ............................. TTAAATGCGGAAACCGATTTTGCTGATTCGAT 313353 29 100.0 32 ............................. AAATCGATTATTTCATCGTTCCTGTTACAAGT 313292 29 100.0 32 ............................. GATATCATCATCAAAGTCTGCGGGGGGCGTAT 313231 29 100.0 32 ............................. CGCCAAACTGGCGATGCAAACCAACAGACTCC 313170 29 100.0 32 ............................. CGTTGCGTGAGCAAAACGGTCTGGCAGAAGCA 313109 29 100.0 32 ............................. TACTGCGACAGCGTAACGTTAGCCGGTAACAA 313048 29 100.0 32 ............................. TTGGGGTGAGTAAATACGACTCTGTTAGAGCC 312987 29 100.0 32 ............................. CCGCATGTTCTTTTAACATGGCTTTAATATTA 312926 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAATCAGCTCGCCC 312865 28 93.1 32 ........-........A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 312805 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 312744 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 312683 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 312622 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 312561 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 312500 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 312439 29 96.6 32 ............................C AGGTGGCGGAATACGGCAACGAGTGGATAACT 312378 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 312317 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 312256 28 79.3 0 ...........AC..A-....C......A | ========== ====== ====== ====== ============================= ================================ ================== 36 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 345465-344154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAPD01000005.1 Erwinia amylovora Ea644, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 345464 29 100.0 32 ............................. TAACAGGAAAACCCATGGCAGAAACATTTACA 345403 29 100.0 31 ............................. GGGATTATTTTTGGACTGGATGTGCTTTAGA 345343 29 100.0 32 ............................. GGGCAAAATCACTTCACGTAATTTGCAGGGTC 345282 29 100.0 32 ............................. ATATCTGCTGCCGAACGGAAAAAAAGAGTCTC 345221 29 100.0 32 ............................. TAAATTTCCTGTTTATCAACCGTTGTTTGCAT 345160 29 100.0 32 ............................. ATGCCGGCACAGTTATTGAACCACTGATCCCG 345099 29 100.0 32 ............................. CGAGATGGTGAGTTGATTCAGGTTAAGCGCAT 345038 29 100.0 32 ............................. GTAATCAGCATCTGGTTTTGAGTTAAACCAGC 344977 29 100.0 33 ............................. ATAAAATCAGGTGACAGTGACGACGAGGAGGAG 344915 29 100.0 32 ............................. ACAGGCACTCATTCGTGGACGTTCTCGCGAAT 344854 29 100.0 32 ............................. GATATCAACCAGTTTCTCAGTGCCTTCGTGGA 344793 29 96.6 32 ....................A........ CGTCTTCGGGGGCTAGAGGGGTATTGTTATTA 344732 29 100.0 32 ............................. GATCTGCTGCTGTGGATTACAGAGATCTAAAA 344671 29 100.0 32 ............................. CTGGGTGGCTCAGAGTTTGCGAGCATATCTCC 344610 29 100.0 32 ............................. AATTAATCCAGCTGTTCGGTAATGCTGTTGCT 344549 29 100.0 32 ............................. TTTTTTAATTGCGTGTTGAGTCGCGGGGCAGA 344488 29 100.0 33 ............................. TTTATACCCGTACCGCGCAGATTCTGGCTGACA 344426 29 100.0 32 ............................. TCCCGATGATCTGTTTAGTTCCATTATCCAGC 344365 29 96.6 32 ..T.......................... TTGGTGGTGTTCTCGGTTACAAGAGGAAAGAT 344304 29 100.0 32 ............................. GCAAAAAAACATGACTGCATATCTGTATCGGA 344243 29 100.0 32 ............................. TCCAGAAGGGCATAACCTGCATTAACCCGCGA 344182 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGTTACTCGTCGTCAGCAGGTAAGCGGCCATGA # Right flank : CCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //