Array 1 5733-4301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEI01000013.1 Streptomyces scopuliridis RB72 strain NRRL B-24574 contig13.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5732 29 96.6 32 ............................T CCGGTTCTGCTGGACCCCTACGGAGGCCCGCA 5671 29 100.0 32 ............................. TCTGCCCCGGTACGGATACGTCCGTGCCGGGG 5610 29 100.0 32 ............................. CACCTGGGCCGTGAGCTGCACCTGATCCTGGG 5549 29 96.6 32 ............................T TCCGGTAAAGGTTATGCAGAAGTACCGCAAAA 5488 29 100.0 32 ............................. GCCTCGGGGTCTGCGTCTCCTTCGAAGTATTC 5427 29 100.0 32 ............................. GGGGGTAACGCCGTGGCTGTCCGTACCGTTCG 5366 29 100.0 32 ............................. CGCGGGGAGCTGGCGGGGGATGTACGGCTGAA 5305 29 100.0 32 ............................. GGCCAGGGCCGCATCCTCTGTACGGCTCTTCA 5244 29 100.0 32 ............................. GCGTTTCCCTGCCCGCCTGAGCGCCTGCGGGC 5183 29 100.0 32 ............................. GCGGTGTCCTCCGCCTCGCCCACCGCGCGGGT 5122 29 100.0 32 ............................. TGCTGCCACGGGTCGAGGACCAGTCCGGCGCG 5061 29 100.0 32 ............................. GACCCGACCTTCGGGCAGGTTCCGCTGGACGC 5000 29 100.0 32 ............................. TCGCAACGGCGGCCCCGGCCACGAGGCCATCG 4939 29 100.0 32 ............................. GACCGGCCCGATGGACTGCCCCACACTGTCGA 4878 29 100.0 32 ............................. TGGCCGGATTCATGGACGAGATCAGAGGCGCC 4817 29 100.0 32 ............................. CACGAATCCCCGTCCTCGACCAGCAGCACCTG 4756 29 100.0 32 ............................. AGGCCGTTCAGCAGCGGGTGTTCGCCGGGCTG 4695 29 100.0 32 ............................. ACCTGCGCACAGATGGTCGCCGACGCCTGGGA 4634 29 100.0 32 ............................. CCGAGTCGCCGCGTGCCGGCGAGGTCGACCTC 4573 29 96.6 32 ............................T ACGGTATCCCTCTGCCGTATTCATGGAGGGGA 4512 29 100.0 32 ............................. AGGACCGCGTCGCCGTCCACGACCATCAGCGG 4451 29 100.0 32 ............................. GTGTGGCCGGGCAGACCGAGCCAGAACCGTTC 4390 29 93.1 32 .........A...T............... CAATTCGCCTGTCCCGGGGCCACTCATCCCGT 4329 29 93.1 0 .............T...........C... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.0 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGGCCAGCCACACGCACAGCAGCCGGGCATCCCGCGCCCCGCCGGGCAACGCCTTGGCGATCAGAGCCCGCACGTTCTCGGGCAGCCAGTTGTCCCACAGCAGCCCGGCCACCGCCGCACTGTCCGCCATATGCCGCCACAGCGGTAGCCACCCCTCAGTGTCCCGATCGTGCTTGGCCCACACAGACCGCACGGGTCCCACGAGCCGGCCCCCAAGCCCCTCACGAGGCTCCTCCATCTCAACGGTCATGGCAGATGAATACAGGTAAACCACCCACCAAGACGGCCATATACGAAAAACATCCGTACACAACACCGCCCCGGATAAAATCCCCGCGGTGGTTCAGGGCAACCCCTACCATCTGGCGTTGCCCTAACCCGACGGGCCGCCGCGCACAAGCACAGAGACCCACACAATGCCCCCTACACACCTTTTGCCGGAATTGATGGAACTGCTCGGAAACCACGCCCGCCGTGAGTAACGCAGCAGGTCACGGAGT # Right flank : AGGTAGCTGAACCAGCCGAGGCCGTGGGCTTCCTGCTTACCTCATCCTCGGGGGCCCGTCGAGTCGAACATGGCCGCCCGGGATGATCGTCTCTCCCAATTGCCCCTCGGGAATTCTTCCGCTGCCGCCAGCATTCAGTCATTCAATAGCACTATTGGCACCGGAGATGGCACCCATAACCCCGCATGTGCGGGGAGCACATATTGCTACCAACCAAAAAGGGGCCATCCCTTGAAGCAAGGGAACTTCATCGGATTCATGATGACAGGTCACTGACCGCCGACACCCAAGAGCGCGAGGAGACTTGCTACGCCGAAGGGCTGAACCCTGCTGGATTCAGCATTGGAACCGACCCGAAGCCCTCTCAGCAGGCACTACCCTCCGCGTATGCCTTTCCGAGGTCTCTACCAACTAAAAAGTTCAGATCACGGGCTCCGTCTCGTTAGAGACGACCGCCGATGACTGATCGTCGTGTCACCTCAGATCTCCGGTCCCGATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15358-16058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEI01000013.1 Streptomyces scopuliridis RB72 strain NRRL B-24574 contig13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15358 29 100.0 33 ............................. GGGTGGGTTCCTGAGGACCGTGACGCGGAGGAC 15420 29 100.0 32 ............................. GACCACCGCACCCGCGCCCCGGCTGCTGCGCT 15481 29 100.0 32 ............................. GTGACCCGGGACTCGGAGGGCGCCACGGTGTA 15542 29 100.0 32 ............................. GAGCCCTGCCTCCCGAGCTTCCTCACGTGCCG 15603 29 100.0 32 ............................. CTCGTACTCGCGGGCGAGCCCGTAGTCGTAGG 15664 29 100.0 32 ............................. TCCTCGGCGCTGAAGAAGGAGCCGATCAGCAA 15725 29 100.0 32 ............................. CGCTGCGACCTGTGCGTCCACCGGCAGGAGGG 15786 29 100.0 32 ............................. TCGGCGGAGGCCGCGGCGAGATCGGCTGCCAG 15847 29 100.0 32 ............................. TGACGGTCCTTGACCTGCTGTTACGGGGTTCA 15908 29 96.6 32 ......A...................... TACCGGCTGGTGCGGCCGGTCGGCGGTCAGCA 15969 29 100.0 32 ............................. TGCTGCGGGAAGCCCATGCAGCGCGACGGCGA 16030 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GGCCACGAAGTAGCCGCAGGACGCAACTACGGAGACGCCGACGAGGCGGTCATCTGGTGACCGTGATCGTCCTCACCAACTGTCCCGCCGGCCTACGGGGGTTCCTCACCCGCTGGCTCCTGGAAATCTCCGCCGGTGTTTTCATCGGCAACCCCTCAGCAAGAATCCGCGACATCCTCTGGGAGGAGGTCGAGCAGTACGCAGGCCAAGGCCGCGCCCTACTTGCCCATACCACCAACAACGAACAGGGCTTCACCTTCCGTACCCACGATCACGCCTGGCATCCCGCCGACCATGAAGGCATCACCTTGATCCGACGCCCGGACACCAACACCCGCCCGGTAACCGCCGAACCGCAATCCGGCTGGAGCAAAGCAGCCAAACGCCGCCGATTCGGAAGAGGCTGACCCGATCCGACGTCACTTTTGAGGGAAATGTCGAATTCGATGAAAGTGCTTCAGAACCGGTTTCCTCTGCGCTAAAACCCCAGGTCACGGAGT # Right flank : CGTCTCCGCGGAGACGGCACGGAGCCGTTCGCCCTGCTCGGCTCTGGCTCAACTTCTGTGACGCGACCACTCTCAGTGATCCGCCTTGCCTTCGAATTTCCGGGCGGCAGAGTCCAAATGGCTCGTTGGGAGAGGGCGGTAGCGCGTGTTCGTTGCCAGCGAAGGCCCGCGAAGTTCATGGCGGCGTGTGTCAGGGTCCTGGCATGACCTCGACACCGGATGGACGCCCTATCCCACCCGCACGTGCTGGCGAGCGCGCCATGCTCGAATCGTGGCTCGACTTTCACCGTGCCACTCTCGCCCTGAAGTGTTCGGGCCTCAAAGACGATCAATTACGGCTGGCCTCGGCTGCGCCGTCGTCGATGACGCTGCTGGGCCTCATCCAGCACATGGCCGAGGTGGAACGCAACTGGTTCCAACGTGTGTTCGCAGGCCAGGACGTGCACGCAGTCTTCGGGGAGAGCAACGTCGACGGCTTTGCACTTGAGGATGGCCGAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //